« Back to Corymbia citriodora search


Detailed information on CNT30126131


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST003831, E-value = 2e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695840Corymbia citriodoraOryza sativa22.5518.7581.4129forward
CNT30675663Corymbia citriodoraSetaria viridis26.9233.1281.82154forward
CNT30631057Corymbia citriodoraVigna unguiculata23.2515.6383.46133forward
CNT30298345Corymbia citriodoraTriticum aestivum26.7521.7383.01153forward
CNT30394033Corymbia citriodoraTriticum turgidum26.7511.3183.01153forward
CNT30562110Corymbia citriodoraActinidia chinensis45.831.7282.82262forward
CNT30510308Corymbia citriodoraSolanum lycopersicum10.3122.8788.1459forward
CNT30352420Corymbia citriodoraEragrostis tef26.9224.8882.47154forward
CNT30362217Corymbia citriodoraSorghum bicolor23.782680.88136forward
CNT30481150Corymbia citriodoraChara braunii22.389.0682.03128forward
CNT3055965Corymbia citriodoraAmborella trichopoda26.2217.2682.67150forward
CNT30318584Corymbia citriodoraAsparagus officinalis32.1715.1684.24184forward
CNT30103353Corymbia citriodoraOryza rufipogon21.8512.4582.4125forward
CNT30577638Corymbia citriodoraOryza barthii28.6725.3180.49164forward

Expression of CNT30126131

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MATQSTSSILLSSAPSSSKGGMSASSPPASSSSMLRPNFNIL*

>peptide 2 (44 aa)
QTFTNCVHVEWQLSRLPPSCSPQHHPPPRGACQHHRLPPHPHQC*

>peptide 3 (66 aa)
RHSQTASTLNGNSVDFLHLALLSTILLQGGHVSIIASRLILINAKAQFQHPVNPGRKSVGIVKAET*

>peptide 4 (92 aa)
MIPLSGLISIEPMLLSLRAWAFMILSIFAVQPYSPVTRQQGESTILSDTTTFSTLSPRMSLMVLHRFSKDFFFSSFFFFSSSVSSSSFSPSFV

Sequence

>CNT30126131
CAGACATTCACAAACTGCGTCCACGTTGAATGGCAACTCAGTCGACTTCCTCCATCTTGCTCTCCTCAGCACCATCCTCCTCCAAGGGGGGCATGTCAGC
ATCATCGCCTCCCGCCTCATCCTCATCAATGCTAAGGCCCAATTTCAACATCCTGTGAATCCTGGCCGCAAAAGTGTTGGGATCGTCAAGGCTGAAACCT
GAGGTCAAGAGCGCTGTCTCGAAGAGCAACATCGTAAGATCCTTCACCGACTTGTCATTTTTGTCAGCCTCAGCTCTCTTCCTCAGCTCGTCCATGATTC
CGTTGTCAGGGTTAATCTCCATAGAGCCCATGCTGCTGTCCCTGAGGGCCTGGGCCTTCATGATCCTTTCCATATTTGCCGTCCAACCATACTCTCCTGT
CACCAGGCAGCAAGGCGAGTCCACAATTCTGTCGGACACGACCACCTTTTCCACCTTGTCCCCGAGGATGTCCTTGATGGTCTTGCACAGATTCTCGAAG
GACTTCTTCTTCTCTTCCTTCTTTTTCTTCTCCTCTTCGGTCTCGTCGTCGAGTTTCAGTCCCTCCTTCGTG