Detailed information on CNT30125558


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3079106Physcomitrium patensBrassica juncea4.4924.3486.1565forward
CNT30650745Physcomitrium patensRosa chinensis3.8723.7394.6456reverse complement
CNT30212877Physcomitrium patensHelianthus annuus3.9422.898.2557reverse complement

Expression of CNT30125558

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MERHIHFMSYYSFFRKSCMFSDIDEHAYQETEFVFFSCYHWMLSCYGPVE*

>peptide 2 (41 aa)
FLIIERALCMIVTTLCGTRLSVCSSDNLTWTQLVSWSIRKG*

>peptide 3 (43 aa)
MENHAISTVLRVIYLIASDPGYVSEGGKNLSNILHFLVNEFLC*

>peptide 4 (34 aa)
MFLKGARTCPTYCISLSMSFFVETSSRVWASGKA*

>peptide 5 (37 aa)
MFSMSEAAAPIPPPLLGHDFRVSLKRTKLVDYGWFSL*

>peptide 6 (77 aa)
MSMPIRKLSLFFFHATIGCYLVMVLLNNHNQDFMKKCMLSEEDWEKKNGEERKVVISKLITSIQMVLLGCCCCCCCS*

>peptide 7 (59 aa)
MIHRIHNTKMESNGMIWRLSSDRTIRDDHTGFLSKFQNHHRRSQLPATMGLKRMSPTNV*

Sequence

>CNT30125558
GTTCTTAATAATTGAGAGAGCATTGTGCATGATTGTGACCACCTTGTGCGGAACAAGGCTCAGTGTTTGCAGCTCGGATAATTTGACGTGGACACAGCTA
GTATCTTGGAGTATTAGAAAAGGCTAGTCTGTGATTGCACGACTGCGTCGAGCTGTATGTCGCCTACCACGGATTCTTGGACGATCTCCGGCGCTGGACC
TGTCCACAGGTTCTCTCGAGAGGTAGGATGTTGTGATTGAACAATTCGAATCCTGACATCCATACATTGCTGGGAGGTTTGAGTTCATTCTACTGGCAGG
AATGTTTGGACAGATGAATGGAGAACCATGCTATTTCCACTGTCTTGAGAGTTATATATCTGATCGCAAGTGATCCTGGATATGTTTCTGAAGGGGGCAA
GAACTTGTCCAACATACTGCATTTCCTTGTCAATGAGTTTCTTTGTTGAGACAAGTAGTCGGGTTTGGGCCTCCGGCAAAGCATGATCCACAGAATTCAC
AATACAAAGATGGAAAGTAATGGAATGATCTGGAGACTGAGCAGTGACCGAACAATACGAGATGACCATACTGGATTCTTGAGCAAATTTCAAAACCATC
ATCGGCGGTCACAGCTTCCAGCGACGATGGGCCTTAAGCGTATGTCACCGACGAATGTTTGACGATTATCGCCGACCGAGGGACTCGAACCCTCGACCAC
GTGGTTAAAAGCCACGCGCTCTACCAACTGAGCTAGGTCGGCTCGATGATCACTTAGATCCAAATAGCAATTTCAAAATATCTAGATATTCTTATTCCAG
TCAATTATTGATTTATGGAAAGGCACATCCACTTCATGTCTTATTATTCTTTTTTCAGGAAATCTTGTATGTTTTCCGACATCGATGAGCATGCCTATCA
GGAAACTGAGTTTGTTTTTTTTTCATGCTACCATTGGATGTTATCTTGTTATGGTCCTGTTGAATAACCACAATCAGGACTTTATGAAGAAATGCATGTT
GAGTGAGGAAGACTGGGAGAAGAAGAATGGAGAAGAAAGGAAGGTTGTGATTAGTAAGTTAATAACTAGCATTCAAATGGTTTTGCTGGGTTGTTGTTGT
TGTTGTTGTTGTTCATGACAGTTGTGAAGTGAAGCCTTTCAGAATACTATCAAACTGGGTACTGGGTCATCCCCACCAGAGGATGCCAATATCTTAGGGG
AACATGTTCTCCATGTCAGAAGCAGCAGCACCTATCCCCCCCCCCCTCTTGGGTCATGATTTTAGGGTTTCATTGAAAAGGACCAAGTTGGTGGACTATG
GCTGGTTCTCACTTTAGTCAATAAAAGTCCAAATTCATATCTCTCATTCATTGATTGACAAAGAAGTAGAGGTTTGCCTCAATGCTTTTTCACAAGGACT
TGAAGCCTAACATATATATATATATATATATATACTTGTGTATATTG