« Back to Physcomitrium patens search


Detailed information on CNT30125320


BLAST search results

BLAST vs Swiss-Prot:
sp|P06353|H33_HORVU, E-value = 3e-24

BLAST vs NONCODE:
NONPOPT001550, E-value = 9e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675375Physcomitrium patensSetaria viridis10.0734.7587.7698forward
CNT30376827Physcomitrium patensArabidopsis thaliana14.2958.983.45139forward
CNT3069232Physcomitrium patensQuercus suber10.3821.3183.17101forward
CNT30628401Physcomitrium patensVigna unguiculata13.6739.5881.95133forward
CNT30200079Physcomitrium patensPisum sativum1126.6286.92107forward
CNT30712448Physcomitrium patensGlycine max9.9722.8284.5497forward
CNT30186142Physcomitrium patensSecale cereale7.6129.0287.8474forward
CNT30304662Physcomitrium patensTriticum aestivum1120.7886.92107forward
CNT30221452Physcomitrium patensHordeum vulgare13.1620.9585.16128forward
CNT30591253Physcomitrium patensMusa acuminata9.4629.4982.6192forward
CNT30508427Physcomitrium patensSolanum lycopersicum10.7930.2683.81105forward
CNT30435418Physcomitrium patensAegilops tauschii10.0722.7985.7198forward
CNT30255419Physcomitrium patensAvena sativa13.6724.9584.96133forward
CNT30657055Physcomitrium patensTriticum dicoccoides1120.4684.11107forward
CNT30447268Physcomitrium patensSaccharum spontaneum14.736.6783.92143forward
CNT30133877Physcomitrium patensLolium perenne10.0746.0186.7398forward
CNT306284Physcomitrium patensZea mays8.6339.2584.5284forward
CNT30605939Physcomitrium patensGossypium raimondii14.0824.8683.21137forward
CNT30722562Physcomitrium patensTriticum spelta11.3120.384.55110forward
CNT30361473Physcomitrium patensSorghum bicolor12.6422.8684.55123forward
CNT30596369Physcomitrium patensOryza meridionalis7.6126.5287.8474forward
CNT30114434Physcomitrium patensEutrema salsugineum13.0531.9183.46127forward

Expression of CNT30125320

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MKLHRQASQQIRKKYDRTEGHRCNVQLYDRFIGLNKSKLNVLGHDGDSLGVNGTQVSVFEKPNEVCLCRLLKGKNSMALETQTSL*

>peptide 2 (63 aa)
MPLPPLEGQEQHGFGNANQSVITCRKRLMSKILQQSMKQIIKQQEINQKETLPKIHQVILMTK*

Sequence

>CNT30125320
AGTTGAAAAAATCGCTGGAAGACTCTTAGTGAGCAACCACGTAGTCCCACCAAGACGTCTGGATTCGGTTTAAGCAACTTCCAGTATTGTTGCCGAAATT
AATCACGATTTGTTCCTGGGATGAAGCTTCACAGACAAGCAAGCCAGCAAATAAGGAAGAAATACGATCGAACTGAAGGTCATCGCTGCAATGTACAGCT
TTATGACAGATTTATTGGATTAAACAAGAGCAAGCTGAATGTCCTTGGGCATGATGGTGACTCTCTTGGCGTGAATGGCACACAAGTTAGTGTCTTCGAA
AAGCCCAACGAGGTATGCCTCTGCCGCCTCTTGAAGGGCAAGAACAGCATGGCTTTGGAAACGCAAACCAGTCTGTGATAACGTGCAGAAAACGTCTGAT
GTCAAAGATACTACAACAAAGCATGAAGCAGATTATAAAGCAGCAAGAAATCAACCAGAAAGAGACGCTCCCCAAAATTCACCAAGTGATTCTCATGACG
AAATAACGAAGTTGAAACCAAGAGCACACCTTAAAATCTTGAGCAATTTCTCGAACCAGTCGCTGGAATGGCAACTTACGGATTAGTAGTTCGGTGCTCT
TCTGGAACTTGCGAATCCCACTGCAAGTAAGCACAAATGTTAAAATTCAGTTTCCTCTGCAGTCGCTAGGTAAGGTTTCTTAAAACTAGAAAACCAGAAT
GGTTAAATCACTCACCGCAGAGCAACTGTACCGGGGCGATAGCGATGAGGTTTCTTAATCCTTCGGTGGTGGGGATGGACTTTCTAGCAGCCTGTAGAAC
CATACTTAAGTAAAAAGTCGATGGTAGCAAAAAAAGAAACTCGAGCAAAACTTGGGCATGTTTTCAGCGCTTATTTTAGTGAATAGACTGACACAAGACC
GGAAAATTCCAACCAAAATTCTGGCTATTTGAGTGAATGTAACAATGTTATCAGTATTACAATTGTACATTGT