Detailed information on CNT301235


BLAST search results

BLAST vs Swiss-Prot:
sp|A7QEU4|PER5_VITVI, E-value = 3e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678680Zea maysSetaria viridis5.531.1686.5767forward
CNT30523062Zea maysSetaria italica9.8531.6684.17120forward
CNT30385102Zea maysTriticum turgidum38.5154.0978.89469forward
CNT30341070Zea maysEragrostis tef6.5730.4283.7580forward
CNT30595986Zea maysOryza meridionalis40.0750.9983.61488forward
CNT30100585Zea maysOryza rufipogon28.6573.1782.23349forward
CNT30116812Zea maysOryza nivara6.1635.2185.3375forward

Expression of CNT301235

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MATLKLSSHHPGTLALSSTSFAVAGDVRSEASDVKRTLCASTFL*

>peptide 2 (40 aa)
MNTANVMLVVDESRERCYINWAGTTRTASLTANRSGLELKP

>peptide 3 (95 aa)
MSAHETTPGHARSTAALAASMTSKPRRLGLLGGPSFSGCGLAGADAGVPPDGGSDDALDDGLGRRTLVVVVPHLEPARSRTRRTVVTSCCLACGS*

>peptide 4 (88 aa)
MSEGTARRSGTKDEQWDRPTVCAPESATMSSAERPLAAKLWTSSGRLEVGGGRKSSVREARRGRRRRRCPRTRRRPGTPAPPRPWRRR*

Sequence

>CNT301235
AACAGGAATTATTATGGTTGCTGCTGATGTATATCATCAGAACAGCTAGTTGACGAGACGGCAGTTCCTCCTGATCTCGCCGCTGTTGCCGGTCTTCACC
TCGACACTGGCCATCTTCACCATGGCCACCTTGAAGCTGTCCTCCCACCACCCGGGGACGTTGGCGTTGTCATCCACCAGCTTCGCCGTCGCCGGCGACG
TGAGGAGTGAGGCGTCCGACGTGAAGAGGACTCTGTGCGCCAGCACGTTCTTGTAATACTGGTTGTCCAGCCTGTCCGGCGTCACGACGTCCTGCACGAC
GGTAGGGTCGTCGCTGGAGCTGGGGCTCGCGGGGCACTGTCCCTTCAGGGACGCGGCGAAGGAGGCGCTGATGTCGGAGGGCACTGCGAGGCGGTCGGGG
ACGAAGGACGAGCAGTGGGACCGGCCGACGGTGTGCGCGCCCGAGAGCGCGACCATGTCCTCGGCGGAGAGGCCCTTGGCGGCGAAGCTCTGGACGAGCT
CGGGGAGGCTGGAGGTCGGCGGCGGGAGGAAGTCGAGCGTGCGCGAGGCGCGTCGCGGGCGGCGAAGGCGACGATGTCCGCGCACGAGACGACGCCCGGG
CACGCCCGCTCCACCGCGGCCTTGGCGGCGTCGATGACCTCGAAGCCCCGGAGGCTGGGGTTGTTGGGCGGGCCGAGCTTCTCCGGCTGCGGGTTGGCCG
GCGCCGATGCCGGGGTTCCGCCGGACGGCGGCTCTGACGACGCTCTTGACGATGGCCTCGGCAGGCGGACACTTGTGGTCGTAGTACCCCACCTTGAGCC
CGCACGAAGCAGGACTCGGAGGACTGTAGTGACCAGCTGCTGCTTGGCATGCGGCTCCTAGTAGGAGCAAGAAAGCACATGAGAGCAGTGCAGCAGGCAC
CTTGCTCGCCATCGCGCTTGCTCTAGCCACAATAATATCACAAACTCAAGTGAGAAGAAGCTGAGTGGTGGTGAGGCGCTGTTTGCTTGCCGCTCCTATT
TATAGCTCGAATTCTTGTTCTTGATAGGGTTTCTGGACGGGTGGCTTGAGAATGTTTCTTTAGGGCAACTAGCTAGCTAGTCGGCATGTATTGATGAATA
CAGCTAATGTGATGCTTGTCGTTGACGAGAGCAGAGAGCGTTGTTATATAAACTGGGCAGGTACGACGCGTACAGCCTCTCTGACTGCTAATCGAAGCGG
TTTGGAACTAAAACCTTG