Detailed information on CNT3012274


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673517Zea maysSetaria viridis18.9656.7988.41138forward
CNT30555389Zea maysOryza glaberrima52.3454.7481.63381forward
CNT30138306Zea maysLolium perenne84.7599.282.01617forward
CNT30353380Zea maysEragrostis tef47.2559.7288.37344forward
CNT30367618Zea maysSorghum bicolor91.3593.6693.08665forward
CNT30597090Zea maysOryza meridionalis29.1246.3983.96212forward
CNT30116475Zea maysOryza nivara30.9140.3983.11225forward
CNT30551969Zea maysOryza brachyantha40.6633.380.74296forward

Expression of CNT3012274

Peptides detected in this lncRNA

>peptide 1 (41 aa)
KYLQLRGMLICSQSLQSYYFWHQIHWMILTLKMSPFLLHAS*

>peptide 2 (29 aa)
MRTRHFRHPRHHWDPSFREEGIEETTLSRS

>peptide 3 (44 aa)
KILTAKRNVDLFSISPIILLLASDTLDDIDPKDVSLFASRFMRL*

Sequence

>CNT3012274
AAAATACTTACAGCTAAGAGGAATGTTGATCTGTTCTCAATCTCTCCAATCATATTACTTCTGGCATCAGATACATTGGATGATATTGACCCTAAAGATG
TCTCCCTTTTTGCTTCACGCTTCATGAGACTTTGATAGAACTCTACAATCTCCGGCGCACGGTGTACCTTGTCACCCCCGCCAAGGTTCCTTGGTAGAGC
ACCTGGAGGTGGTGGTGGAGGAGGTGGTGCACCTGGTGCCCGTGGCGTTTGTACTCCACTTGCAATACTGGTAGCCCCTGAAGCAGCGGTTGATCGAGGG
GGAGGTGGTCTGGGAACTCTTGTTGCTCTCTTCTCAACGTTGGCAAGCTTCATCTGGCTCACCACCAGGGTGTTGTTTTGGTTGTCACTGGATTGCTCAC
TGGATTCAGCATTAGCTGCAGGGGATCTCTCCTTAATTTGAGCAAGTTTTGGAGGGAGTGCACCTTTTGGAGAGGAAATTAGAGCTGAACTGTGGCCACC
ACCAAACCTTTGTGCTCTTGCTTGCCCAGCCTTCTCTTTTATAGCCTTCTCCCGTTCAGTTGCAAGTTTGTGCCTATCTTTGTAAGCAGGATACTTCTCA
TCAGCAAAACCTTCAACTGTCTTGGACATCAATTGGAATGAGGACGCGACATTTTCGTCATCCAAGACATCATTGGGATCCCTCTTTCCGTGAAGAAGGC
ATTGAAGAAACAACACTCTCAAGGTCTG