« Back to Physcomitrium patens search


Detailed information on CNT30121647


BLAST search results

BLAST vs Swiss-Prot:
sp|P20866|CB2_PHYPA, E-value = 3e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30172108Physcomitrium patensTrifolium pratense22.8615.9184.21171forward
CNT30359318Physcomitrium patensLactuca sativa35.1642.9782.89263forward
CNT30645477Physcomitrium patensCannabis sativa21.9343.0484.76164forward

Expression of CNT30121647

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MAWTKNPNMENIARRPFLISFTFNSAKVSGSEESPAVSQP*

>peptide 2 (60 aa)
MLTFSRIIHLHRMTTMPTQSSRVTTLRTQGRKMIRTSTAFLSHTMRAHETEPNKAELSTGI

Sequence

>CNT30121647
GTTCATATATATTTACACTGCGGACACGCACATCAATTGGGTAATCGTGCATCCCACAGAAGACATAAGGGCAAAGAGTAACTGACAAGCAGATTCCTAG
GTGTCTACATTCTCCTCACTTGCAGCTATGATAGAGGAGTGTGTCGAGCACCGACCCTTCACTAGTCCCTCTGCAACAGCGTCAACATAGAAGCCGCTGC
CAGTCGTTTCGTCAGATTCACTCTAGTTTCCGGGGGTGAAGTTGGTAGCATAGGCCCAAGCGTTGTTAGCAACGGGGTCCGCAAGGTGGTCATTCAAGTT
CTCAAGGGGTCCCTTTCCAGTAACAATGGCTTGGACGAAGAATCCGAACATGGAGAACATAGCCAGACGTCCGTTCTTGATTTCCTTCACCTTCAACTCA
GCGAAGGTCTCGGGGTCGGAGGAGAGTCCGGCGGTGTCCCAGCCGTAGTCACCAGCGAACTCACCGTTGAGGTATGATGGGGTCTCACCAGAGAATGGGC
CCAACCACTTAGGTCGGTCAGCGCCATACCTGCAATGCCAAGATAGTGGAACAGCCTCAGGGCAATGCTCACATTTTCAAGGATTATACATCTACACAGA
ATGACTACGATGCCGACACAATCATCCCGTGTTACGACATTAAGGACACAAGGCCGAAAAATGATAAGAACCAGCACTGCGTTTCTAAGTCATACAATGA
GGGCCCACGAGACAGAACCCAATAAGGCAGAATTGAGCACCGGGATCT