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Detailed information on CNT3012136


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 3e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30239865Zea maysAvena sativa56.1341.885.53380forward
CNT30117588Zea maysOryza nivara44.3124.8691300forward

Expression of CNT3012136

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVQTENQRALTCIRTPKGHRRRLPHLPGTKLVA*

>peptide 2 (72 aa)
MWSARFSSGPFPVTMAWTKNPNMENMARMLCAWMRLGFPSAPSMAQREWITSSSRFLANVSGSADSPAVSQP*

Sequence

>CNT3012136
CTTGTCGATTGAACAATAGTTTACATCATGGTACAAACCGAAAACCAGCGTGCGCTCACATGCATCCGGACACCTAAAGGTCACCGGCGGCGCCTCCCTC
ACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCAAGCGTTGTTGTTGACGGGGTCGGCAATGTGGTCAGCGAGGTTCTCGAGCGGGCCCTTCCCGGTGAC
GATGGCCTGGACGAAGAATCCGAACATGGAGAACATGGCGAGGATGCTCTGCGCGTGGATGAGGCTCGGGTTCCCGAGCGCGCCCAGCATGGCCCAGCGG
GAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCCGCCGACAGCCCCGCGGTGTCCCAGCCGTAGTCGCCCGGGAACTCGCCCGTCA
GGTAGCTCGGCGGCTCGCCGGACAGTGGGCCCAGGTACAGCACGCGGTCGGGGCCGTACCACGGGCTCCCGGACGCCGCCGCTGGCTTGGCCTTCGCCGC
CGTCTTGCGCATCGTCACGCGGGCCTCGCCGAAGGCGGACGACGACGGCACGTTCACGGCCTTGCCGGCGAAGGCCGTGGAGGAGAGGGCCATGGTGCTG
CTCGCCATTGCGGCTGCTTTTTTTATTGCACTGCTACGTAGCGAGACTTGCAGATCGATGGTGGCTTGAGATGCTGT