« Back to Citrus clementina search


Detailed information on CNT30121063


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 4e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30195835Citrus clementinaPisum sativum36.7469.2982.95176forward
CNT30490956Citrus clementinaOlea europaea46.7653.3381.25224forward
CNT30506120Citrus clementinaNicotiana attenuata47.3938.882.82227forward
CNT3091192Citrus clementinaSolanum tuberosum57.4139.6882.55275forward
CNT30145737Citrus clementinaMedicago truncatula73.957.4782.2354forward
CNT30205370Citrus clementinaHelianthus annuus46.1433.8485.07221forward
CNT3023412Citrus clementinaPopulus trichocarpa35.4930.0986.47170forward
CNT30577473Citrus clementinaOryza barthii57.6250.6480.07276forward
CNT30114394Citrus clementinaFicus carica36.3329.2487.36174forward

Expression of CNT30121063

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MLGCRKERLGCTMVKWGCMQVRWGYMPVRWGYSLVKLDCNWEK*

Sequence

>CNT30121063
GACTGTATTTGGCAGACTGAGGATTGTAGCTTGGGGATGTAGGACTATAGGTTGGTGAAGTTGGGCTATAACTTGGTGAAGTTGGACTATAACCAGGAGA
AGTGGGGCTATAGGCTGGTGAAGTGGGGCTGTACGATGGAGAAGTGGGGCTGTATGACGGTGAGGTAGGGCTGTACGAAGGTGATGTTGGGCTGTAGGAA
GGAGAGGTTGGGCTGTACGATGGTGAAGTGGGGCTGTATGCAGGTGAGGTGGGGCTATATGCCGGTGAGGTGGGGCTATAGCTTGGTGAAGTTGGACTGT
AACTGGGAGAAGTAGGGCTATATCCAGGCGAGGTGGGACTGTATCCAGGTGAAGTTGGGCTGTATCCAGGTGACGTGGGACTGTATCCAGGAGATGACGG
ACTGTAGCCTGGTGATGATGGGCTGTATCCAGGTGATGAAGTAGGAGAGAAGGCCATTCCACCAACATAAGGAGAAAAC