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Detailed information on CNT30120862


BLAST search results

BLAST vs Swiss-Prot:
sp|F4HPY8|ALKR6_ARATH, E-value = 9e-47

BLAST vs NONCODE:
NONPOPT001153, E-value = 8e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692870Citrus clementinaOryza sativa25.1824.6481.02137forward
CNT30639567Citrus clementinaNymphaea colorata21.8817.8782.35119forward
CNT30316626Citrus clementinaCorylus avellana41.7344.4285.46227forward
CNT30703861Citrus clementinaQuercus lobata37.8780.4785.92206forward
CNT3070513Citrus clementinaQuercus suber37.8730.2585.44206forward
CNT30169745Citrus clementinaPistacia vera12.8723.899070forward
CNT3096605Citrus clementinaSolanum tuberosum30.719.9580.24167forward
CNT30566888Citrus clementinaActinidia chinensis36.9540.3681.59201forward
CNT30146672Citrus clementinaMedicago truncatula25.1857.8183.21137forward
CNT3059952Citrus clementinaArabidopsis lyrata12.520.2488.2468forward
CNT30133477Citrus clementinaLolium perenne15.0740.5985.3782forward
CNT30152051Citrus clementinaPrunus persica38.2426.579.33208forward
CNT30570762Citrus clementinaVitis vinifera37.8749.6483.5206forward
CNT30704154Citrus clementinaPrunus avium22.7915.682.26124forward
CNT3022456Citrus clementinaPopulus trichocarpa42.132.982.1229forward
CNT30101518Citrus clementinaOryza rufipogon15.2634.384.3483forward

Expression of CNT30120862

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLVKCATGYPEGRISTSFKKVSMKTEVEFQSLRK*

>peptide 2 (33 aa)
MPYPHTDRPLQHLLKQWIQVPPFLLELVSRTEL*

>peptide 3 (40 aa)
MQLQNTCYACKMCNRVPRRQNIHFLQEGLHEDRGGVSESS*

Sequence

>CNT30120862
AATTTCAACGCGTCTAGAAATTTCAGAACATTACAGCCATCTTGTTTTATTTAATGCGTCTGATGTATTTTGATTACATCGAATCCAAGCTCTTAAATCT
AATTAAACCTACTTACAAAATACATACAAGGATTTAACCCCGAGCACAACATAGGAACTCAATGCAATTGCAAAACACTTGTTATGCTTGTAAAATGTGC
AACAGGGTACCCAGAAGGCAGAATATCCACTTCCTTCAAGAAGGTCTCCATGAAGACAGAGGTGGAGTTTCAGAGTCTTCGTAAGTAGATGCCTTACCCC
CATACCGATCGCCCTTTACAGCATCTGCTGAAGCAATGGATTCAAGTTCCACCATTTCTTCTAGAGTTAGTTTCACGGACAGAGCTTTAATATTTTGATT
GAAGTTCTCAATCTTAGTGGTTCCAGGAATCGGACATACGTCATCTCCCTGGTGATGAACCCATGCTAATGCAAGCTGTGATGGGGTGCATCCTTTCCTC
GTTGCTATTTCATTAACACGCTCAAATAACTTTTTGTTATGCTC