« Back to Citrus clementina search


Detailed information on CNT30120688


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-162

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-106

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376617Citrus clementinaArabidopsis thaliana72.3473.6382.66790forward
CNT30147198Citrus clementinaMedicago truncatula81.8763.3682.21894forward
CNT30311150Citrus clementinaCamelina sativa81.3264.3582.55888forward
CNT30460578Citrus clementinaSaccharum spontaneum81.5944.5382.83891forward
CNT30217431Citrus clementinaKalanchoe fedtschenkoi81.0465.3683.05885forward
CNT30364985Citrus clementinaSorghum bicolor78.0283.0483.1852forward

Expression of CNT30120688

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVSELSTSRVIVLPVRVFTKICISNRAFSCERRKN*

Sequence

>CNT30120688
TAAACTAATTTTTATTCATTACCACATAAAACTTGATGTGACAAAAAGACTGAAACAGAAGCAAGACTAACAAATGAAAAATAAATATTACTGCTACAGC
AGAGCAGAACAGACACGGCGGAGCACAAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCAGCTAAAGTACGGCCATCCTCAAGCTGCTTCCCAGCAA
AGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATAGTATCTGAGCTCTCCACCTCCAGAGTAATAGT
CTTCCCAGTCAAGGGTCTTAACAAATATCTGCATGCCTCCCCTGAGACGAAGAACAAGGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCGGCCAAGGT
GCGGCCATCTTCCAACTGCTTACCGGCGAAGATCAATCTTTGCTGGTCCGGCGGTATCCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTATCAATCGTA
TCCGAACTCTCCACCTCCAGAGTGATCGTCTTCCCAGTTAGGGTTTTGACGAAGATCTGCATACCACCACGGAGCCTGAGGACGAGATGAAGGGTTGACT
CCTTCTGGATATTGTAATCAGCCAAGGTGCGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCTTG
AATCTTCGCCTTAACGTTATCGATCGTGTCTGAGCTCTCAACCTCGAGGGTTATCGTCTTCCCGGTTAGGGTTTTGACAAAGATCTGCATGCCTCCGCGG
AGACGAAGGACAAGATGGAGGGTTGACTCCTTCTGTATGTTGTAATCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGCCTCTGCT
GGTCCGGGGGGATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCGAGAGTAATAGTTTTGCCAGTCAGGGT
TTTCACGAAGATCTGCATATCGAACAGAGCTTTTTCTTGCGAACGAAGGAAGAATTGATAATTGTTGCGATCAAGATGATGAAATGATGAGT