« Back to Citrus clementina search


Detailed information on CNT30120665


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 5e-100

BLAST vs NONCODE:
NONGMAT000502, E-value = 8e-72

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700914Citrus clementinaQuercus lobata40.9576.2985.12457forward
CNT3033584Citrus clementinaTheobroma cacao41.1367.0184.97459forward

Expression of CNT30120665

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSLCWSGGIPSLSWILAFTLSIVSELSTSRVIVFPVNVLTKICIPPLRRNTRWSVDSFWML*

Sequence

>CNT30120665
ATGAGAAAATTTGAGAATATATATATTTAAAAACTACTGCTTATATTATTATTGCTGATAGAAAGAGGAAATTAGGCCCAAGCGGCTGGCCATTACACAA
TTGTAATTACAAAATAATTAAAGCAAAGCGCCCAATCCAACCTAATTAATTATTATTAGCGCCATCCAATCAAACGCGGACACATCCACATATATTTTTT
TAGAAGTCACCACCACGGAGACGGAGGACAAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGAGTCCGGCCATCCTCGAGCTGCTTGCCGG
CGAAGATGAGCCTCTGCTGGTCCGGAGGAATCCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTAAT
CGTCTTCCCGGTCAACGTCTTGACGAAGATCTGCATTCCTCCCCTCAGGCGCAACACAAGGTGGAGCGTGGATTCCTTCTGGATGTTATAATCGGCCAGG
GTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATCG
TGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTCACAAAGATCTGCATCTGTTAATCGTAATCAAAGCAAATAAATTAATTTTA
ATTAACTAAATCAACAACACTAATCAAGACCAGAACAAGGATAATGATTAAGAATGTAGTTACTAATTACTTACGTTGGAAGGCTGAGATTGGGAGCCTC
GGTATCTAAACTAAGTATGTTTTTGGTTTCTTTTTCTTTTTTTTTTTTATTGGTTTAATATAATCAGGGAACGAGCACGGAAAAGTGACGCCCGGGGGCC
GGTTTATATAGAGATGTTTGCCGACTTGACGAGGAAATATCGCGAGCTAATTCCAAGAAGGTAACGCTTCCACGCACTTAATGCAAACACGCTAACGAAG
GATCACCGTTCATTTAGCTGACGCTAAAAGTTGGTACTAAACGGCGACAGATCCACGGGTCCCACGACGCGCTGCTCCGCTCCACTACCGTCTCATGGTA
GCCCACCAACCATTTC