« Back to Citrus clementina search


Detailed information on CNT30120658


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONGMAT000502, E-value = 4e-110

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30528740Citrus clementinaEucalyptus grandis66.979.6487.37673forward
CNT3019984Citrus clementinaCitrullus lanatus90.6660.1282.24912forward
CNT30379315Citrus clementinaManihot esculenta66.552.9785.2669forward
CNT30169882Citrus clementinaPistacia vera91.0544.487.34916forward
CNT30636126Citrus clementinaCapsicum annuum90.6649.4382.24912forward
CNT30312626Citrus clementinaCamelina sativa85.8866.6783.45864forward
CNT3077383Citrus clementinaBrassica juncea87.8768.2182.92884forward
CNT30260967Citrus clementinaBrassica rapa90.2674.8682.27908forward
CNT30359535Citrus clementinaLactuca sativa90.2653.7682.49908forward
CNT30643414Citrus clementinaCannabis sativa84.5980.8982.84851forward
CNT3032244Citrus clementinaTheobroma cacao90.6679.3783.77912forward
CNT30334097Citrus clementinaCynara cardunculus83.476.3482.48839forward
CNT3066362Citrus clementinaSelaginella moellendorffii90.5692.3982.55911forward
CNT30114615Citrus clementinaEutrema salsugineum90.3692.6683.61909forward

Expression of CNT30120658

Peptides detected in this lncRNA

>peptide 1 (43 aa)
QAQLNNHLSIHHHEDGGQDGGWTPFGCYNQQGYGRPLAASQRR*

>peptide 2 (37 aa)
HKHNLTTISAFTTTKTEDKMEGGLLLDVIISKGTAVL*

Sequence

>CNT30120658
CACAAGCACAACTTAACAACCATCTCAGCATTCACCACCACGAAGACGGAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTA
CGGCCGTCCTCTAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTTTGCCTTGACATTATCAATTGTAT
CAGAACTCTCCACCTCCAGAGTAATAGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATGCCTCCACGGAGACGGAGGACAAGGTGAAGAGTTGACTC
TTTCTGGATGTTATAGTCAGCCAACGTGCGGCCGTCTTCCAATTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGG
ATCTTGGCCTTCACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCATGCCGCCACGGA
GCCTGAGCACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCTTCGAGTTGCTTTCCAGCGAAGATCAGCCTCTGCTG
GTCGGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTCCCGGTCAGGGTT
TTGACGAAGATCTGCATGCCGCCACGGAGCCTGAGCACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTT
GCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTGCTGGATCTTGGCCTTGACGTTGTCGATTGTGTCAGAGCTCTCCACTTC
GAGAGTGATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATATTGACAAAGGTTGTTTATCTAGCGAGCAAAGAGAGAGATTTTACAATTGTTTTG
AGAGAG