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Detailed information on CNT30120599


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONGMAT000502, E-value = 3e-117

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513431Citrus clementinaJuglans regia68.269.8285.29680forward
CNT30728102Citrus clementinaCorchorus capsularis91.3760.4585.07911forward
CNT30608677Citrus clementinaGossypium raimondii91.3770.5182.99911forward
CNT30229013Citrus clementinaAnanas comosus88.7756.1284.97885forward
CNT30128346Citrus clementinaCorymbia citriodora66.871.6985.74666forward
CNT30622816Citrus clementinaDaucus carota91.4748.5182.89912forward
CNT3031526Citrus clementinaTheobroma cacao91.3784.1283.97911forward
CNT3051100Citrus clementinaCucumis sativus91.4764.1882.24912forward

Expression of CNT30120599

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MQGGFFLDVVIGQGAAVFQLLSGEDQPLLVGRDSLLVLDLGLHVIDRVGALDLEGNRLPG*

>peptide 2 (37 aa)
HKHNLTTISAFTTTKTEDKMEGGLLLDVIISKGTAVL*

>peptide 3 (43 aa)
QAQLNNHLSIHHHEDGGQDGGWTPFGCYNQQGYGRPLAASQRR*

Sequence

>CNT30120599
CACAAGCACAACTTAACAACCATCTCAGCATTCACCACCACGAAGACGGAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTA
CGGCCGTCCTCTAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTTTGCCTTGACATTATCAATTGTAT
CAGAACTCTCCACCTCCAGAGTAATAGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATGCCTCCACGGAGACGGAGGACAAGATGCAAGGTGGATTC
TTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCCAATTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGG
ATCTTGGCCTTCACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCATGCCGCCACGGA
GCCTGAGCACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCTTCGAGTTGCTTTCCAGCGAAGATCAGCCTCTGCTG
GTCGGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTCCCGGTCAGGGTT
TTGACGAAGATCTGCATGCCGCCACGGAGCCTGAGCACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTT
GCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTGCTGGATCTTGGCCTTGACGTTGTCGATTGTGTCAGAGCTCTCCACTTC
GAGAGTGATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATATTGACAAAGGTTGTTTATCTAGCGAGCAAAGAGAGAGATTTTACAATTGTT