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Detailed information on CNT30120580


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 9e-121

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641251Citrus clementinaNymphaea colorata78.2848.2884.07854forward
CNT30500348Citrus clementinaCoffea canephora76.955.7582.12839forward
CNT30157648Citrus clementinaPistacia vera82.466.0585.43899forward
CNT30637282Citrus clementinaCapsicum annuum82.4945.7181.78900forward
CNT3086353Citrus clementinaVigna radiata76.0838.7383.73830forward
CNT30171101Citrus clementinaTrifolium pratense82.454.0683.54899forward
CNT3061767Citrus clementinaArabidopsis lyrata81.0354.1381.9884forward
CNT30229606Citrus clementinaAnanas comosus82.586882.91901forward
CNT30330420Citrus clementinaDioscorea rotundata81.8552.7882.19893forward

Expression of CNT30120580

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVSELSTSRVIVLPVKVFTKICISNRAFSCERRKN*

>peptide 2 (48 aa)
MKGRLLLDVIIRKSPSILKLFASEDQTLLIRWNSFLVLDFCLDIVNCV*

Sequence

>CNT30120580
TAAACTAATTTTTATTCATTACCACATAAAACTTGATGTGACAAAAAGACTGAAACAGAAGCAAGACTAACAAATGAAAAATAAATATTACTGCTACAGC
AGAGCAGAACAGACACGGCGGAGCACAAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCAGCTAAAGTACGGCCATCCTCAAGCTGCTTCCCAGCAA
AGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATAGTATCTGAGCTCTCCACCTCCAGAGTAATAGT
CTTCCCAGTCAAGGTCTTGACAAATATCTGCATACCACCCCTCAGGCGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCCGCAAGAGTC
CTTCCATCCTCAAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTGTCTTGGATTTTTGCCTTGACATTGTCAATTGTGT
CTGAGCTCTCAACTTCCAAAGTAATTGTTTTCCCAGTAAGGGTCTTAACAAATATCTGCATGCCTCCCCTGAGACGAAGAACAAGGTGGAGAGTTGACTC
TTTCTGAATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCTTGA
ATCTTCGCCTTAACGTTATCGATCGTGTCTGAGCTCTCAACCTCGAGGGTTATCGTCTTCCCGGTTAGGGTTTTGACAAAGATCTGCATGCCTCCGCGGA
GACGAAGGACAAGATGGAGGGTTGACTCCTTCTGTATGTTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTG
GTCCGGCGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTTACGTTGTCGATGGTGTCCGAGCTCTCGACTTCGAGAGTAATAGTTTTGCCGGTCAAGGTT
TTCACGAAGATCTGCATATCGAACAGAGCTTTTTCTTGCGAACGAAGGAAGAATTGATAATTGTTGCGATCAAGATGATGAAATGATGAGT