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Detailed information on CNT30120561


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516347Citrus clementinaJuglans regia27.6922.4385.35157forward
CNT3069623Citrus clementinaQuercus suber36.1644.9684.39205forward
CNT30565894Citrus clementinaActinidia chinensis34.2226.2282.47194forward
CNT30174921Citrus clementinaVigna angularis22.0525.6180.8125forward

Expression of CNT30120561

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MVMMGLERLVVSLKSKIRSLKMKKFYDKIEKSESMRVEIRSRKARKLIEKTMKIADSPKTKTFAF*

>peptide 2 (57 aa)
KRGASLSHKRIAWFAFPNFHLKCFYSVTTNRYNSFIFSCSLVLLKLSATLSLPKLVT*

Sequence

>CNT30120561
AAAAAGGGGGGCTTCTCTCTCTCATAAAAGAATTGCGTGGTTTGCCTTTCCGAACTTTCACTTAAAATGCTTTTATTCTGTGACAACCAACCGTTATAAT
TCATTCATTTTCTCTTGTTCACTTGTTCTTCTCAAACTCTCTGCTACTCTTTCTCTGCCCAAGCTTGTTACTTAGCAGTTGAATATCTACCTGGCGAGAT
AGCAATGGTGATGATGGGATTGGAAAGGTTGGTAGTGAGCTTGAAGTCTAAAATAAGGTCACTGAAGATGAAGAAATTCTACGACAAGATTGAAAAGAGT
GAGAGCATGAGAGTCGAAATAAGAAGCAGGAAAGCTCGGAAGCTTATTGAAAAGACCATGAAGATTGCGGACTCTCCCAAGACCAAAACTTTTGCTTTCT
GACATATATACATTTACTTATATACAATATATACACGAGTCTCTCAATATCAAATGATTTAAGAGACTATGAACAGAGCTACAACTTACCCTCTGCTTGC
TGTTGATGTTATGGGGGAGAAAAAAAGATAAGGGTTTTTGTATTTACTTGTGTCTTTACTCTCTCTT