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Detailed information on CNT30120555


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30511569Citrus clementinaSolanum lycopersicum3.820.339050reverse complement

Expression of CNT30120555

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MLLVALIPRYKKSTRERNKRESSLKKSNREDKRKKRIRES*

>peptide 2 (56 aa)
WVKHAAFWACFKSSPKSNNSALSHLARSLSLLPNSISLVSIISSSAPPWSHHRQTP*

>peptide 3 (56 aa)
MAIHSNYGLSGESTTASLMEANLRMEGFVNFLGDIFEVIKKLKFYGWNVAVVNLQR*

>peptide 4 (36 aa)
MVNKKSIPNPNQHIYIERERDTHTYMHTYIYLFYAS*

Sequence

>CNT30120555
AGTGGGTAAAACACGCTGCATTTTGGGCTTGCTTTAAATCCTCTCCCAAATCAAATAACTCGGCTCTCTCACATCTCGCTCGCTCACTCTCTCTTCTCCC
AAATTCAATCAGCCTTGTCTCTATTATATCATCTTCGGCACCGCCCTGGTCTCATCACCGACAAACGCCGTAATAGACATTCTCAAGGCTTAGGGCCCTT
CCCTCTAGGGGTAGGAAAATCATGATCGGGACAGTGGACCAAAAGCTATAGAATTTAGTTGTGGGTCTTTTGTCAAAATGGAGTAGTCTTACTTTTTTAT
TTATTTACCATGAATGGTAAATAAAAAAAGTATTCCGAACCCAAATCAGCATATATATATAGAGAGAGAGAGAGACACACACACATATATGCATACATAC
ATATATTTGTTTTATGCCTCGTAACTCTTCCTCAGCCGAACTTGGGAAGAATACGAGAGCAAGTATGGTAGCATAGAAAAAATGCGTCCCTCATCATTAA
TATGGCTATTCATAGTAATTATGGCCTCTCAGGAGAATCGACAACTGCATCTTTGATGGAGGCGAACTTGAGGATGGAAGGCTTTGTAAACTTTCTTGGT
GACATTTTTGAGGTGATCAAAAAGCTCAAGTTTTATGGATGGAATGTTGCAGTAGTAAACTTGCAGAGATGACAAAGAACTTGACTATAGAGGAACTAAA
ACAAGTATGAGAGAAGATGTTGTAATCGTTACTACAGCAATCTGGGAGCAACTGCAGAAAAGATTACGGGCGTGTTAAATGACAAAGCAGCAACATGAGG
CACAAAAAGATATGTGATCCGAGGTATTTTTTTTTTAAAAAAGACACGTGACCACATGCTTTTGGTTGCTCTAATCCCAAGATATAAAAAGAGCACACGT
GAAAGAAATAAGAGAGAGTCGTCATTGAAGAAAAGTAATAGAGAAGACAAAAGGAAAAAGAGAATAAGAGAAAGTTGAGGGCTGCAGCAAGGGATTCCAG
AAGAAAACGAAAGAGATGTCATAAAGACTTAACTCAATTCTTCATCTTTATTTTCTTGTTTTCTTTTCTATATGAGAATGTGTTTGATGGCAGAAACGAG
TATTGGTACTATTTCGGTTAATCACCCATTTAGAGGATACTAGCTAAGAAGAAGCCTAAAAAAAGTCTGACTTTATGGAGTAAATTAAGACAATACATGG
TTTTAAATTGAGTTTCCCAAGTTGAGTTAATCTCGATTTGAATAGGATCATGCTTGATCTAAAATTAGTGAAGAACTAGACATAGAGATTCACGTTGTAG
GACAATTGGAATCTAG