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Detailed information on CNT30120554


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 5e-154

BLAST vs NONCODE:
NONGMAT000502, E-value = 3e-114

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30275114Citrus clementinaChenopodium quinoa71.2197.8683.94685forward
CNT30165850Citrus clementinaPistacia vera72.0469.6587.01693forward
CNT30613113Citrus clementinaArabis alpina71.3174.6583.09686forward
CNT3031779Citrus clementinaTheobroma cacao72.0471.5284.85693forward
CNT3050869Citrus clementinaCucumis sativus64.2483.1884.14618forward

Expression of CNT30120554

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MEGGLLLNVVISQSTPVLKLLPSEDEPLLIRWDPFLVLNLGFDIVNGIRTLYLQGNRLPGQCLNKNLHATPQTQNQMKS*

>peptide 2 (31 aa)
MVSELSTSRVIVFPVNVLTKICMPPLRRKTR*

Sequence

>CNT30120554
CATAACTCGTTCAACAAACAACAACATATAAAAACAAAAGACCATATTATCAATTATAACTAGTCTTCTTCAAGAAGACAAAGACAACATAAGGACCATC
TTGAACAGAAAAGACATTGACACGGGGCGCAGTGAATCCCCCTCAGAAACCACCACCTCGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGAATG
TTGTAATCAGCCAGAGTACGCCCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCTTGGCTT
TGACATTGTCAATGGTATCAGAACTCTCTACCTCCAGGGTAATCGTCTTCCCGGTCAATGTCTTAACAAAAATCTGCATGCCACCCCTCAGACGCAAAAC
CAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCGCGAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGA
ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGCTCTCGACTTCGAGGGTAATCGTCTTTCCCGTTAGGGTTTTGACGAATA
TCTGCATGCCCCCACGGAGACGAAGCACGAGGTGAAGAGTTGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGGCCGTCTTCGAGCTGTTTTCCGGC
GAAGATCAGACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCGAGAGTAATG
GTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTTTTAAAAGTTTCTTAGCGAGAGAATTGGAGAGATTTGTTGAGAATATCGAATAACCCGATTGG
GTGAAACAGGTGAGAGAGGAGCGCTTTAAATAGAAGAGGAAGCCGACTCAATTAAGGAAAAG