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Detailed information on CNT30120413


BLAST search results

BLAST vs Swiss-Prot:
sp|O82709|CALX_PEA, E-value = 3e-130

BLAST vs NONCODE:
NONVVIT003147, E-value = 1e-63

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676354Citrus clementinaSetaria viridis26.9543.2580.28218forward
CNT30517641Citrus clementinaJuglans regia36.5955.0285.47296forward
CNT30377662Citrus clementinaArabidopsis thaliana37.9533.9681.76307forward
CNT30278532Citrus clementinaChenopodium quinoa37.3327.4884.44302forward
CNT30728459Citrus clementinaCorchorus capsularis46.3560.4882.13375forward
CNT30628962Citrus clementinaVigna unguiculata47.190.9383.73381forward
CNT30709122Citrus clementinaGlycine max14.7133.8191.6119forward
CNT3043981Citrus clementinaPrunus dulcis18.5442.6188150forward
CNT30164689Citrus clementinaPistacia vera67.2498.9188.79544forward
CNT30189101Citrus clementinaSecale cereale27.5621.2282.96223forward
CNT30397803Citrus clementinaTriticum turgidum27.4428.2882.88222forward
CNT30561419Citrus clementinaActinidia chinensis72.3192.7183.76585forward
CNT30238817Citrus clementinaBrassica oleracea16.9325.786.13137forward
CNT30144977Citrus clementinaMedicago truncatula100.1287.9580.49810forward
CNT30140632Citrus clementinaLolium perenne10.6342.1687.2186forward
CNT30605054Citrus clementinaGossypium raimondii48.0868.6185.86389forward
CNT30126269Citrus clementinaCorymbia citriodora29.0562.0180.43235forward
CNT30686469Citrus clementinaTriticum urartu14.7121.0687.39119forward
CNT30349705Citrus clementinaEragrostis tef21.1424.3985.38171forward
CNT30365925Citrus clementinaSorghum bicolor37.3334.0179.8302forward
CNT3038556Citrus clementinaCucumis melo37.738.6182.62305forward
CNT30149228Citrus clementinaBrachypodium distachyon37.764.2183.28305forward
CNT30101562Citrus clementinaOryza rufipogon37.3334.9582.78302forward
CNT30116414Citrus clementinaOryza nivara8.65259070forward
CNT30333676Citrus clementinaCynara cardunculus63.0498.8480.2510forward
CNT30725707Citrus clementinaLupinus angustifolius36.7153.987.54297forward
CNT3048947Citrus clementinaCucumis sativus29.1716.6881.78236forward

Expression of CNT30120413

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLSNKIPSCIVQISMPTAAIGSKSGLSSSK*

>peptide 2 (36 aa)
MQKPDRTLQLSHPLISKCCQTKYHPALSRSQCQQQQ*

>peptide 3 (45 aa)
MYSPLLGFLCFKMKCTLFVAPHLSGPNIIIYGDSLSNSLDTQPAS*

>peptide 4 (83 aa)
MWSMPFALVGRIPLHWPLPLAASRGCFTLWVINLWGLPFTILLIIPILRLLVIWIRNCLLRNERWLKIISSEEICLLLLLSIN*

Sequence

>CNT30120413
GCCTTCAGTTTCTCTTTCTCAACATCAAACTTAGGCTTCCATGCAGAAGCCCGATAGGACTCTGCAACTTTCTCATCCTTTGATATCAAAATGTTGTCAA
ACAAAATACCATCCTGCATTGTCCAGATCTCAATGCCAACAGCAGCAATAGGCTCAAAGTCAGGTTTGTCAAGCTCAAAATAGTTGGGGTTTGGAATCTG
CTGAGGCTTCCAAATACCCTTGTAATTAGGGTTGTCAATATGTGGAGCATGCCATTTGCCCTTGTAGGCAGGATTCCTCTTCATTGGCCTCTTCCACTCG
CCGCATCCAGGGGCTGCTTCACACTTTGGGTTATCAATCTTTGGGGCCTCCCATTCACCATCCTCCTCATCATCCCAATCCTCAGGCTTCTTGTCATCTG
GATCAGGAATTGTCTTCTCAGGAATGAGCGGTGGCTGAAAATCATCAGCAGCGAGGAAATTTGCCTTCTGCTTCTCCTCTCCATCAATTAAAATTCTCAA
CTCATTATCAGGTTTCAAGATGGCAGTGTATACATGAGTCAGTTTATCAGAGGGCACAGAAGGTGGGTTCTTGAGATGGTGTTCAATGTACTCTCCACTC
TTGGGATTCTTATGCTTTAAGATGAAGTGCACCTTGTTTGTTGCACCACATTTATCAGGTCCAAACATAATCATATACGGAGATTCATTGTCGAACTCCT
TGGATACCCAACCTGCCTCCTGAGGCCGCAGGTATTTCAGATATGCACCACCACATTCAAGACCATTCTGGAGGCGAACCTCATACTGGAGGACAACAGT
TCCATCCTT