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Detailed information on CNT30120117


BLAST search results

BLAST vs Swiss-Prot:
sp|P69315|UBIQP_LINUS, E-value = 1e-157

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-132

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316435Citrus clementinaCorylus avellana98.8287.683.76671forward
CNT30512879Citrus clementinaJuglans regia93.9666.3984.33638forward
CNT3020302Citrus clementinaCitrullus lanatus97.6455.7182.5663forward
CNT30525138Citrus clementinaPhaseolus vulgaris99.4141.2884675forward
CNT30637294Citrus clementinaCapsicum annuum97.6486.2282.81663forward
CNT3088525Citrus clementinaVigna radiata96.3245.0183.33654forward
CNT30609009Citrus clementinaGossypium raimondii98.3870.0284.43668forward
CNT30713920Citrus clementinaMalus domestica golden75.8594.8484.27515forward
CNT30626099Citrus clementinaDaucus carota99.8521.7283.63678forward
CNT30572920Citrus clementinaVitis vinifera86.0160.2183.05584forward
CNT30330410Citrus clementinaDioscorea rotundata85.1365.1682.87578forward
CNT30603728Citrus clementinaOryza punctata86.1654.0283.93585forward

Expression of CNT30120117

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MPSLSWILAFTLSIVSELSTSRVIVFPVRVFTKICMPPRRRSTK*

>peptide 2 (35 aa)
SELSTSRVMVFPVNVFTKICIPPRSLNTKCSVDSF*

>peptide 3 (94 aa)
MQCGFLLNVVICKGPPIFKLLACKNQPLLVWWNALLILDLGLHIINSVRTLYLQSDCFSSESLHKNLHATTKAKHQVKGRFLLNVVVSKGTAIF*

>peptide 4 (61 aa)
MSSRKSAFLHAVSTPNAVWIPSECCNLQGSSHLQAACLQKSTSAGLVECPPYLGSWPSHYQ*

Sequence

>CNT30120117
GTCTGAACTCTCAACCTCCAGGGTAATGGTTTTTCCCGTCAATGTCTTCACGAAAATCTGCATTCCTCCACGCAGTCTCAACACCAAATGCAGTGTGGAT
TCCTTCTGAATGTTGTAATCTGCAAGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGAATGCCCTCCTTATCTT
GGATCTTGGCCTTCACATTATCAATAGTGTCCGAACTCTCTACCTCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCATGCCACCACG
AAGGCGAAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGGCCATCTTCTAGCTGCTTTCCAGCAAAAATCAGTCTCTGC
TGATCAGGAGGGATTCCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATTGTATCAGAACTCTCAACTTCCAAGGTGATAGTTTTACCAGTCAGGG
TTTTCACAAATATCTGCATTCCACCTCTTAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCAAGGGTGCGGCCATCCTCAAG
TTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTGGCTTTGACATTGTCA