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Detailed information on CNT30120103


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30541214Citrus clementinaBrassica napus6.1921.7195.4566forward

Expression of CNT30120103

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MSFQLKQHYIETAGVITQMHYLCSKSERPSSLSI*

>peptide 2 (38 aa)
PNFTKFTKLNCVVLSIPTPLSATPLLSFSYNPTQSLTI*

>peptide 3 (65 aa)
TLTSPNSQNSTASSYQSRLLSQPLLSYLSLTIQHNLLLSNSIFPSQSHLSSTTRRRKENEEDPPI*

Sequence

>CNT30120103
ACCCTAACTTCACCAAATTCACAAAACTCAACTGCGTCGTCTTATCAATCCCGACTCCTCTCTCAGCCACTCCTCTCTTATCTTTCTCTTACAATCCAAC
ACAATCTCTTACTATCTAACTCAATTTTTCCCTCTCAATCTCACCTATCTTCAACTACCCGAAGGAGAAAGGAAAACGAAGAAGACCCGCCCATTTGAGT
CGTTGCGAGCCAGAAAGCGTACCGGTGAGCGTGTTTGGATCCGCGAAGGCAATCACTCGAATGTTCCCCTAACCCAACCTGAAACAGAACGGACTGGAGG
GAACTGCAGTGAATCATCGCTTTTGGGCGCAGGCAGCCCTCTACCATCCATCCCATTGCATTTCATCGTCTCGCTGGCTCAGCTGAACAATACAGGTTTC
GCTTCCTCTCCCCTGCGGTCGAGCCTGCTCTCGATCCAACTCAAATTTTCCCTCTCAATCTCGCCTCTTTTCAATCCCTAACCTTAAAATCTTTCTATTA
CAATCCAACAGAATCTCACACGGCCGTGAAATTCTAGCCACTTTTTTGCCTAATGCCAATCTTCGTCATCGAGAAAAATGATTTGAGGGGTTCAATTTAG
CTCCAAGATCGTGGACGGATGTCTTGGTGAAAGTTAAAGAGCGTTGTTAGAGGCTGTTTAAAGAAGAAGGCAGAAGCACCACTTATGTGAAGCAGTTGTA
GATCTGGGCATGGTAATTAAGTAAGCAGTGCAGGCGTGCAGGAGGGCTCGTCTCAAGTTCAATATTATGGGCGCACAAAATCACTGGGCAGGAGCACTTT
CCAGGGCAGCAGCTACTCTTTACAGATCCCCTTCCCAAGTCGCCTAATCAAGAAGACAAGAATTTCCTATTTCATGAGCTTTCAGCTGAAGCAACATTAC
ATAGAAACTGCTGGTGTGATAACACAAATGCACTACTTATGTTCAAAGAGTGAAAGGCCGTCATCCTTATCAATTTAGCTTCTAAATTTGTTAAATGTAG
CCGCAATTAGTAGGCATTTGATTGGATGGTAGAAATTCTTATGTATTTAAGATTATTTAGTTACGA