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Detailed information on CNT30119164


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONPOPT000063, E-value = 1e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Citrus clementinaOryza sativa57.9447.1280270forward
CNT30674634Citrus clementinaSetaria viridis54.5135.0383.86254forward
CNT30522155Citrus clementinaSetaria italica42.722.6480.4199forward
CNT30641074Citrus clementinaNymphaea colorata18.0322.8986.984forward
CNT30534291Citrus clementinaEucalyptus grandis42.0630.7785.2196forward
CNT30377201Citrus clementinaArabidopsis thaliana54.5144.4185.43254forward
CNT30727252Citrus clementinaCorchorus capsularis62.8839.1287.37293forward
CNT30381383Citrus clementinaManihot esculenta64.1617.0282.94299forward
CNT30402401Citrus clementinaBeta vulgaris50.6419.8785.17236forward
CNT30629386Citrus clementinaVigna unguiculata15.2427.5287.3271forward
CNT30196370Citrus clementinaPisum sativum69.3133.8981.73323forward
CNT30486254Citrus clementinaOlea europaea33.9141.2583.54158forward
CNT30710178Citrus clementinaGlycine max61.5967.6983.97287forward
CNT3092760Citrus clementinaSolanum tuberosum43.5629.3486.7203forward
CNT30223001Citrus clementinaHordeum vulgare25.5442.8185.71119forward
CNT30390564Citrus clementinaTriticum turgidum42.4965.1383.84198forward
CNT30559885Citrus clementinaActinidia chinensis68.6761.0786.25320forward
CNT30542792Citrus clementinaBrassica napus41.6344.784.02194forward
CNT30511260Citrus clementinaSolanum lycopersicum30.0434.7482.86140forward
CNT30553024Citrus clementinaOryza glaberrima34.5511.2780.75161forward
CNT30253208Citrus clementinaAvena sativa42.0616.3185.2196forward
CNT30261872Citrus clementinaBrassica rapa64.8134.1283.11302forward
CNT30614070Citrus clementinaArabis alpina56.4419.0385.55263forward
CNT3015387Citrus clementinaZea mays55.7916.0784.23260forward
CNT3041960Citrus clementinaChlamydomonas reinhardtii25.5434.984.03119forward
CNT30608822Citrus clementinaGossypium raimondii37.9826.4283.05177forward
CNT30203517Citrus clementinaHelianthus annuus64.8126.8781.46302forward
CNT30627268Citrus clementinaDaucus carota53.2220.0383.47248forward
CNT30681848Citrus clementinaTriticum urartu5026.3383.69233forward
CNT30721961Citrus clementinaTriticum spelta13.9521.9692.3165forward
CNT30341625Citrus clementinaEragrostis tef57.7327.5982.53269forward
CNT30368415Citrus clementinaSorghum bicolor67.8130.7184.49316forward
CNT30595566Citrus clementinaOryza meridionalis34.5532.0183.85161forward
CNT30369370Citrus clementinaOryza glumipatula35.8425.1983.23167forward
CNT30422340Citrus clementinaPapaver somniferum67.3837.0783.12314forward
CNT3054138Citrus clementinaAmborella trichopoda30.0427.6185.71140forward
CNT3022498Citrus clementinaPopulus trichocarpa45.0638.3987.62210forward
CNT30322043Citrus clementinaAsparagus officinalis66.7437.1683.92311forward
CNT3036150Citrus clementinaCucumis melo14.5920.1885.2968forward
CNT30332119Citrus clementinaDioscorea rotundata38.4128.1983.8179forward
CNT30150001Citrus clementinaBrachypodium distachyon22.132.5988.35103forward
CNT3099786Citrus clementinaOryza rufipogon35.8436.3885.03167forward
CNT30575530Citrus clementinaOryza barthii57.9429.980270forward
CNT30602702Citrus clementinaGaldieria sulphuraria33.0517.0982.47154forward
CNT3049477Citrus clementinaCucumis sativus31.9752.4685.23149forward

Expression of CNT30119164

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MLLSASVNSISSIPSPVYQCKKALRRNMAVNCSLTLLNISWMDVELPIKVDAIFRPRGGISHTLDFTLLGIHSTK*

>peptide 2 (40 aa)
CSKRTTNNIVLKDRNCKQQQKKPQYKGVGLIKRSFSVVAL*

>peptide 3 (33 aa)
MPSSDHVVEYRTRWTSHCWGSTPQSRMNSCSVH*

Sequence

>CNT30119164
TGCTCGAAAAGAACAACGAACAATATCGTCTTAAAAGACAGAAATTGTAAACAACAACAAAAGAAGCCACAGTACAAGGGGGTTGGTCTCATCAAGCGTT
CTTTTTCTGTGGTTGCCCTTTGATTGCTACCCTTTCTTAGCCCTCCTCATACTCTTCCTCATCATCAGCTGTTGCATCCTGATATTGTTGGTACTCAGCC
ACCAAGTCATTCATGTTGCTCTCTGCCTCAGTGAACTCCATCTCATCCATACCCTCCCCAGTATACCAATGCAAAAAGGCCTTACGCCGGAACATGGCAG
TAAACTGTTCACTCACCCTCCTGAACATCTCTTGGATGGATGTTGAGTTACCAATAAAAGTAGATGCCATCTTCAGACCACGTGGTGGAATATCGCACAC
GCTGGACTTCACATTGTTGGGGATCCACTCCACAAAGTAGGATGAATTCTTGTTCTGTACATTAAT