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Detailed information on CNT30119130


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30506309Citrus clementinaNicotiana attenuata29.2454.6783.99281reverse complement
CNT3045660Citrus clementinaPrunus dulcis8.9520.5389.5386reverse complement
CNT30637715Citrus clementinaCapsicum annuum10.8232.9193.27104reverse complement
CNT30508578Citrus clementinaSolanum lycopersicum9.5734.3386.9692reverse complement
CNT30666800Citrus clementinaTriticum dicoccoides5.120.6893.8849forward
CNT30229743Citrus clementinaAnanas comosus12.1749.5887.18117forward
CNT30714122Citrus clementinaMalus domestica golden12.1728.3388.03117forward
CNT30620547Citrus clementinaCajanus cajan13.5341.490130forward
CNT30705533Citrus clementinaPrunus avium22.372585.12215reverse complement

Expression of CNT30119130

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MSFFFYRYNKSLFCFALYHIGSIKMNQSNKIKK*

>peptide 2 (31 aa)
MLFDFLSQLRTSQPTIRLGFYVMQISVATTI*

>peptide 3 (76 aa)
MLYYTVFYEMTYRPYILESYIIDIFFLSFSHPSIYPHAFRFSFTTSNFTTYNQIGFLCYANFSCYNDMTTILYLDWF

>peptide 4 (38 aa)
MVLSQCHLYYRTGHESFFSSSSSRMKGLKTILSRYRGI*

>peptide 5 (31 aa)
HSSSMLFTESCSFGVIIDGSFSMPSLLQNWT*

Sequence

>CNT30119130
TCATTCTTCCTCTATGTTGTTTACGGAATCTTGTTCTTTTGGGGTTATAATTGATGGTTCTTTCTCAATGCCATCTCTACTACAGAACTGGACATGAGAG
TTTCTTCTCATCCAGCTCCTCGCGAATGAAAGGACTAAAAACGATTTTATCAAGATATAGGGGAATTTAATGAATAATATACTGAAGCATAGGATTTTTT
GAAAGTTCATCTAATTAATCTATTCTAAATTTGTATATCATGTTTAGATATAGAATTGAAACATTTATGTTCTATTTATAGATAATCTCAATGTCTTTTT
TTTTTTATCGTTATAACAAATCTTTATTTTGTTTTGCCCTTTACCATATCGGATCGATCAAAATGAATCAATCCAATAAAATCAAAAAATAAACCTTTCG
CGGGCGAATATTTACTCTTTCAATATCTATTTCAGTTGTAGGGTTAGTTCATGACCTCTACGAATAAAAGAATAGTTTAGTTCCTGGGTTCGTTTCGCCA
TCCCACCCAATAAATCATTAAGATTCATTTCCAATAGAATCTTCTTTTTCTTTATTCACGGGTTCCGTCGTTCCCATTGCTTCTCGATTAATGGTTAGGT
CTGAATTCTCCAACGGAGCCCTTAATGAAATTTTTTCTTAAGTCAATTTTCTCAGTTTTTATTGGCTCGGGGCTCTTGATTTTTTTTGTTCCATGAGCGG
ATTCATCTAGTTAGGGATGAATCAGTATTGATGCTATATTACACTGTTTTTTATGAGATGACTTACAGACCTTACATATTGGAATCTTATATCATTGATA
TTTTCTTTCTCTCTTTCTCTCATCCTTCCATTTATCCGCATGCTTTTCGATTTTCTTTCACAACTTCGAACTTCACAACCTACAATCAGATTGGGTTTTT
ATGTTATGCAAATTTCAGTTGCTACAACGATATGACCACTATATTATATCTTGACTGGTTC