Detailed information on CNT3011897


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3071804Zea maysQuercus suber28.2315.1185.1194forward
CNT3036150Zea maysCucumis melo41.1440.6586.13137forward
CNT30150001Zea maysBrachypodium distachyon26.7328.1691.0189forward
CNT30602702Zea maysGaldieria sulphuraria20.427.5585.2968forward

Expression of CNT3011897

Peptides detected in this lncRNA

>peptide 1 (68 aa)
GLGSRIFLFFLLVLLILSCGVLVLLVLGHQVIHVTLCLSELHLIHALTRVPMQEGRWVGCRTHSTSHC*

>peptide 2 (77 aa)
MLLSASVNSISSMPSPVYQCKKADGWDVAHTRLHIVRDPLHKVGRVLVLHVQHLLIHFLGAHLPTEHSRCREVATVAR

>peptide 3 (39 aa)
WLRQQDLPLLPPRTPHPQLWRLGTAGTRPPGHSCYSLPQ*

Sequence

>CNT3011897
TGGCTTAGGCAGCAGGATCTTCCTCTTCTTCCTCCTCGTACTCCTCATCCTCAGCTGTGGCGTCTTGGTACTGCTGGTACTCGGCCACCAGGTCATTCAT
GTTACTCTCTGCCTCAGTGAACTCCATCTCATCCATGCCCTCACCCGTGTACCAATGCAAGAAGGCCGATGGGTGGGATGTCGCACACACTCGACTTCAC
ATTGTTAGGGATCCACTCCACAAAGTAGGAAGAGTTCTTGTTCTGCACGTTCAGCATTTGCTCATCCACTTCCTTGGTGCTCATCTTCCCACGGAACATA
GCAGATGCCGTGAGGTAGCGACCGTGGCGAGGG