« Back to Citrus clementina search


Detailed information on CNT30118125


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39172|AER_ARATH, E-value = 1e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530009Citrus clementinaEucalyptus grandis9.0631.5986.78121forward
CNT30702461Citrus clementinaQuercus lobata9.7420.4784.62130forward
CNT30128700Citrus clementinaCorymbia citriodora8.2427.8587.27110forward

Expression of CNT30118125

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSSTYTILHYWYDQFQEFWDRGYSNHLQEII*

>peptide 2 (49 aa)
MKTESYTLHFQDQHRLLQSAHCNNEVRKMVKAFIHANLLRAASKSGSSL*

>peptide 3 (29 aa)
MLQIHRHTLFLEGKAHINTYAVKPGIPRII

Sequence

>CNT30118125
CTTTGATTTATAGCTGAATACAACATAAATCAAACAACCTTCAAACACATTACCAACACATCTTAACAGGGCTCTGAAAATGAGTGGCACACTTCATTTT
TACAGTGTCTATTAATAATATCATTCAGAAGCAACTACAACCAATTGTTTTCCAATACAAAGGCTGACGGAGCTTTCGCAAGGCCTTGAGCTATGTCTTC
AACATACACAATACTTCATTATTGGTATGACCAGTTCCAAGAATTTTGGGATAGAGGTTATAGTAATCACTTGCAAGAGATCATTTGATGCGAATCCATA
TTGAAACTACTCGCATCTAGTTGTCTACTCCTTACAAGCTTCTAAAGGTTGTAGTGTGAGATCATTCCACATACGGCGATGCGGCCACGAATTCTCATGT
TGAGTAGCACTGCATCAAGCATCTTACCCCCAACATTTTCGAAATAGATGTCGATACCTTCAGGAAAGCACCTGGGAAAACAAATATGATTTCAGCAAAC
TTGGAATAAAATAATGCGGCGAATCTTTTCATTTCCCAAATAAACATGCATCACAAATATGATTCTGTTAGCTGCAAGTGAAAATTTCCCTGTGAAATGA
ATATCAATCAAGCAACTGAATTCCTAGTTTATACTACGTATGGCAATGGTATAAAAAATCAATGTAACGAATGAGATCAGTGATCTCTGTTTGTCCTGTT
TTATGAAAACAGAGAGCTATACATTACATTTTCAGGACCAACACAGATTACTTCAATCAGCGCATTGTAATAATGAAGTGAGAAAAATGGTTAAAGCATT
CATTCATGCTAACCTCTTAAGAGCTGCATCTAAGTCTGGTTCTTCCTTATAGTTAAAAGCGTCATCAAACCCAAACTTGTTCTTCAACAGATCGACCTAA
TGTTGAAAATGTAATCAAATGAGAAACAGCACAAAGAAAAAGAAGCAGGTTAATATAATCATCTAATAAAACAAAATATGATTTCAAGCATTTATCAACT
AACATTTCTCAAAGACCAATCAACTAGGTGGTAATAAGTCAGTTTCAGTTAGACTAATGATCAAATATCCATGATTAGTTAGAACACAAATAATGTGACA
TGCACAATTCTTTCACAAGGTGTTATGTTTTTATTTAGAGCTTAAGGGTTAAGGGTGCAAACTCACCTTTTCTTTGCTTCCGGCACTCCAACAACATGGC
AACCAACCAACTTCGCAATTGCCAACAGCTGGCCAACAGCTCAGATGCTGCAGATACATAGACATACTCTCTTTCTAGAGGGGAAAGCTCATATAAACAC
ATATGCAGTCAAACCAGGCATACCTAGAATAATCA