Detailed information on CNT30118102


BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 5e-62

BLAST vs NONCODE:
NONORUT002193, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555612Oryza nivaraOryza glaberrima49.9654.2699.47567forward
CNT30597252Oryza nivaraOryza meridionalis27.7569.2398.41315forward
CNT30371423Oryza nivaraOryza glumipatula48.2879.6599.27548forward
CNT30104624Oryza nivaraOryza rufipogon46.7871.2899.06531forward
CNT30578465Oryza nivaraOryza barthii49.9645.4799.47567forward

Expression of CNT30118102

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MKLMSCTCLTLSKPMIRTNASGYAFLASSSSLSTWVASVHPNMGSFHMVQYLPS*

>peptide 2 (38 aa)
MPHPTTYSRSRYHSYIKSERDQVKQKQKQSTAGKIKRR*

>peptide 3 (48 aa)
MAAALASRGGRGCGRIGRRARAYPRAFVAGSRARGGVAPGSWVVAVVAS

>peptide 4 (73 aa)
MCVGSVGNYLHAPDPAAIADVAEAGVAGAAGDGHAGGGLEPLEGCDGGGRRRHHGGGHLCSSPSSLLLCSSTS*

>peptide 5 (76 aa)
MHLILPPLLTLPKLELPERRATGMPAVDLSPWKGATVVADDAITEGAISAAHQALSFFARVLLEMHCSAHRLPRYV*

Sequence

>CNT30118102
TGATTTTTTAATTCCATGATCAAATTTTCATTGTCGACGAATTGATTGTTGGACACATATGCTCTAGGATTCACATCCATCTCATACCCTTTGTATAAAT
ATATATAGCCGGAGCTTTCATAGATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACATCAAGTCAGAGAGAGATC
AGGTGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGTGGGAGACATCATCGAATCAG
AGATGAACAATTAAACGAGGCTATATATGACGATGACGGCTTAGTTGCCACCAGACTCCTCGCAGCCCGGGGGCTTGTAGGCGATGAAGCTGATGAGCTG
CACCTGCCTAACGTTGTCGAAGCCGATGATACGGACGAATGCATCAGGGTACGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCGTCGGTG
CACCCGAACATGGGCAGCTTCCACATGGTCCAGTACCTGCCGTCGTAGTATCCAGGGGACCTGTGGTCCTCCACGGTGAGCGGTGGCAGGTAGGAGAGGG
TCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGAATGAATAAACGATAATTGAGTTGTTGGTTAATGTTGGTTAAGAAGAAGAAGAAGAAGAAGAA
GAATGTGTGTTGGATCAGTAGGTAATTACCTGCATGCACCTGATCCTGCCGCCATTGCTGACGTTGCCGAAGCTGGAGTTGCCGGAGCGGCGGGCGACGG
GCATGCCGGCGGTGGACTTGAGCCCCTGGAAGGGTGCGACGGTGGTGGCCGACGACGCCATCACGGAGGGGGCCATCTCTGCAGCTCACCAAGCTCTCTC
CTTCTTTGCTCGAGTACTTCTTGAGATGCACTGCTCTGCACACAGGCTCCCGCGGTACGTATAAATAGCCAAAACTCAGCGGATCGGATGGCAGCGGCGC
TCGCGAGCCGCGGAGGCCGGGGATGTGGTAGGATTGGCCGGCGTGCGCGCGCCTATCCGCGGGCGTTTGTGGCTGGCTCACGCGCGCGCGGTGGTGTCGC
GCCGGGCTCGTGGGTTGTGGCCGTGGTGGCATCTC