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Detailed information on CNT30118099

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30673222	Oryza nivara	Setaria viridis	35.34	45.64	92.71	288	forward
CNT30521178	Oryza nivara	Setaria italica	12.76	21.27	92.31	104	forward
CNT30513228	Oryza nivara	Juglans regia	31.17	32.65	83.07	254	forward
CNT30375849	Oryza nivara	Arabidopsis thaliana	26.38	19.2	83.72	215	forward
CNT30403349	Oryza nivara	Beta vulgaris	23.31	54.6	86.84	190	forward
CNT30504596	Oryza nivara	Nicotiana attenuata	20.74	27.48	83.43	169	forward
CNT30249492	Oryza nivara	Avena sativa	18.28	43.7	89.93	149	forward
CNT30136078	Oryza nivara	Lolium perenne	24.54	77.22	87	200	forward
CNT30650401	Oryza nivara	Rosa chinensis	32.76	30.31	84.27	267	forward
CNT30211728	Oryza nivara	Helianthus annuus	25.64	79.17	81.34	209	forward
CNT30721247	Oryza nivara	Triticum spelta	33.87	52.57	89.86	276	forward
CNT30367469	Oryza nivara	Sorghum bicolor	35.34	41.32	92.71	288	forward
CNT3027382	Oryza nivara	Populus trichocarpa	30.55	51.45	84.74	249	forward
CNT30148668	Oryza nivara	Brachypodium distachyon	26.75	71.48	88.99	218	forward

Expression of CNT30118099

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MPAPYFTPSRKTESSLTSLYLRVLRPQSGFTQRMLVSSTASILLTRSAISSVDGILGEWMS*

>peptide 2 (52 aa)
MGMSDLGPKRLTKPNHRQWIHWTQIIQKQDGYDGIPPRNLRELAAKAILTSR*

>peptide 3 (43 aa)
MPAPYFTPSRKTESSFSSDREFSMVITSASMLMMEWMMSLKLE*

Sequence

>CNT30118099
CAACTCGGGTGAAAACCAGACAAAAGCCTTGGGTACTTGGCAGAACATAACATCAACTCTCCTTGAAAATTTTGTAATTTGATCCGCAACAACTCAGATG
TAGATGAAACACTGCTGATTTCCACTCAGTTTACAATACAAATACACCGACAGACTGCCTCAAAAACCACCAAATTCATTCAAAGTAAAATGGGTATGAG
TGATCTTGGCCCCAAGAGACTGACTAAACCTAACCACAGACAGTGGATCCACTGGACCCAGATTATTCAAAAACAAGATGGCTATGATGGCATTCCTCCT
CGCAATCTAAGGGAACTTGCTGCAAAGGCGATCCTCACTTCGCGCTAGCGAGCTGGGTGCGGATGAGCTTGGGTTCACCCAGAGAATGTTAGTGTCGAGC
ACCGCAAGCATCTTGTTGATGCGGTCCGCAATCTCCTCCGTGGACGGGATCCTGGGGGAGTGGATGTCATAGACACCAGGACCAATGCCAGCACCATACT
TCACACCCTCGCGGAAGACAGAGAGCAGCTTGACCTCGTTGTACTTGCGGGTCTTGAGACCGCAGTCAGGGTTCACCCAGAGAATGTTAGTGTCGAGCAC
CGCGAGCATCTTGTTGACGCGGTCCGCAATCTCCTCTGTGGACGGGATCCTTGGGGAGTGGATGTCATAGACACCAGGGCCAATGCCAGCACCATACTTC
ACACCCTCACGGAAGACAGAGAGCAGCTTCTCATCGGACCGGGAGTTCTCGATGGTGATCACATCAGCGTCCATGTTGATGATGGAGTGGATGATGTCGT
TGAAGTTAGAGTAGC