Detailed information on CNT30118094


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697878Oryza nivaraOryza sativa10069.4898.01503forward
CNT30104316Oryza nivaraOryza rufipogon10089.98100503forward
CNT30578598Oryza nivaraOryza barthii10092.6398.21503forward

Expression of CNT30118094

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MSIKEPMNLSLSPSPIAEDVSMNILLRILMACFFSTESHWSHSRMLSKVPIALLLVDISCHRILFDFVGPYINRINRLSIFTPSSAIRDHSLCSFL*

>peptide 2 (43 aa)
MSIRMPMNFSLSLSPINEDGSMHISLRMLNSCFLSARSTPARF*

>peptide 3 (35 aa)
LAVVKKHVHQDADEFFSVTFAHKRRWIHAYFFENA*

Sequence

>CNT30118094
CCTTGCTGTTGTGAAGAAACATGTCCATCAGGATGCCGATGAATTTTTCTCTGTCACTTTCGCCCATAAACGAAGATGGATCCATGCATATTTCTTTGAG
AATGCTTAACTCTTGTTTCTTGAGCGCCAGATCTACACCTGCCAGATTTTGAAAGTCACCATTACTGTTGTGAAGAGACATGTCCATCAAGGAGCCGATG
AACCTTTCTCTGTCTCCTTCACCCATAGCTGAAGATGTATCCATGAATATCCTTCTGAGAATCCTTATGGCGTGTTTCTTCAGCACAGAGTCACATTGGT
CACACTCAAGAATGCTCTCCAAGGTGCCGATTGCTTTGCTGCTTGTTGATATTTCATGCCACAGAATATTGTTTGATTTTGTAGGGCCATACATAAATCG
CATAAATCGGCTTAGTATCTTCACGCCGAGCTCTGCCATACGGGACCATTCGTTATGTTCTTTTTTGTGAAGTGATCCCTTGGACGTTATAAGTGCCACA
ATC