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Detailed information on CNT30118085


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 6e-23

BLAST vs NONCODE:
NONORUT002251, E-value = 1e-115

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524561Oryza nivaraSetaria italica29.413.4888.54157forward
CNT30639598Oryza nivaraNymphaea colorata26.0323.2882.73139forward
CNT30533654Oryza nivaraEucalyptus grandis26.2228.5787.86140forward
CNT30549812Oryza nivaraIpomoea triloba27.1527.282.07145forward
CNT30514302Oryza nivaraJuglans regia24.7223.1290.15132forward
CNT30275526Oryza nivaraChenopodium quinoa26.7825.9185.31143forward
CNT30180424Oryza nivaraSecale cereale28.0923.1892.67150forward
CNT30221624Oryza nivaraHordeum vulgare28.0922.1292150forward
CNT30386243Oryza nivaraTriticum turgidum28.0922.1692.67150forward
CNT3084841Oryza nivaraVigna radiata24.9124.9183.46133forward
CNT30249706Oryza nivaraAvena sativa28.0923.1594150forward
CNT30467515Oryza nivaraSaccharum spontaneum28.2820.5291.39151forward
CNT30135597Oryza nivaraLolium perenne28.0929.0193.33150forward
CNT307034Oryza nivaraZea mays28.4619.2690.13152forward
CNT30624138Oryza nivaraDaucus carota26.426.4585.11141forward
CNT30346089Oryza nivaraEragrostis tef27.3425.9891.1146forward
CNT30597257Oryza nivaraOryza meridionalis92.799.299.39495forward
CNT30355824Oryza nivaraLactuca sativa26.7818.3381.12143forward
CNT30371492Oryza nivaraOryza glumipatula89.5189.0199.58478forward
CNT3053146Oryza nivaraAmborella trichopoda26.0322.0682.73139forward
CNT30108688Oryza nivaraOryza longistaminata62.3659.3699.1333forward
CNT30104475Oryza nivaraOryza rufipogon100.5695.5599.26537forward
CNT30578401Oryza nivaraOryza barthii92.788.5598.79495forward
CNT30581754Oryza nivaraEchinochloa crusgalli29.420.5291.08157forward
CNT3065513Oryza nivaraSelaginella moellendorffii8.820.793.6247reverse complement

Expression of CNT30118085

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PRAALIQKAASRAYNLHLSTPVSGHPVKP*

>peptide 2 (48 aa)
MIYDVNSPLFRSFLSQKGGASSDKRKMEEQKPKEQRPKASENKPVMNE*

Sequence

>CNT30118085
CCCAGGGCCGCTCTTATACAGAAAGCAGCATCCCGTGCTTATAATCTCCACCTTTCTACCCCAGTATCCGGACACCCCGTGAAACCCTAGCGACTCTTGC
CCCGGCGGCGGCGGCGGCGGCAGCAAAGGCGAAGATGATCTACGACGTGAACTCCCCTCTCTTCCGCTCCTTCCTCAGCCAGAAGGGCGGCGCCTCCTCC
GACAAGAGGAAAATGGAAGAGCAAAAGCCAAAGGAGCAGAGGCCCAAGGCCAGTGAGAACAAGCCTGTGATGAATGAATGAAGGCTTTCTGATGTGTTTG
GTCCTTACAAGGAATAGGCTTCAATCATGTGATTCCTAGTATGTTTCTGTACTGGTTCTGTTTAAGTGAGTTTGATGTGAACCATGTCTGGAACATCTGA
GAACTTCCCAGCTATCAATCTTTAATTTTACATCTGAGAACTTCCCAGCTATCAATCTTTAATTTAGCTTGATAATTTTCATGCGTGAGATGGAATTTAG
CTTGATAATTTTCATGCGTGAGATGGAATGGGAT