Detailed information on CNT30118079


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30104572Oryza nivaraOryza rufipogon87.148.891001459forward

Expression of CNT30118079

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MEAHLFCRSWASIFIGMEVKILPVKSFVHPCVVQSNRDEPPPPPAHGLSCSLSSARRIWIVLRHEFAYVDAPTNQILKDLKSQILLPRVCYAKSF*

>peptide 2 (94 aa)
MSSKNWHIPFLHVVVSLLDMSLNKGLVLVLGSKQCLVSHDIFTEMFHRIYVCNARKFLFVLLLCNLQNILIIEGFKFNFKYAMHNHLQLTIYVP*

>peptide 3 (91 aa)
CLVPPPPPPPARAVLDDTLHLVHARGDGGRREGRRRSGEGAGARASPVAEPSRAASRWCSPREARFSPDPRKYYNARSTEIVEAGEALGMH*

>peptide 4 (50 aa)
MISSLKCFIGYMYAMQENFCLYYYCVIYRTYLSLRASNLTSSMLCITTCS*

>peptide 5 (61 aa)
MVIMQHSFMMCTLLCLFSCKNLTFDPTIFSINNSWLLQCYMGIIYPKGHEVSRMHNTLFKS*

>peptide 6 (68 aa)
LPRAASASPSRSCRPRRHPPPGARARGRRAEGGTAPLGRGSRSARVAGGRAKPSCVAVVLSAGGEIQP*

>peptide 7 (81 aa)
AASCRLRLPLPLVPSSTTPSTWCTRAGTAGGGRDGAAREREQERARRRWPSQAELRRGGALRGRRDSALIRGSTTMQEAQK*

>peptide 8 (42 aa)
MPLIAYTPRSFSAFAKFGLPRQMLVANYLLKHLSYFCISLHV*

Sequence

>CNT30118079
GCTGCCTCGTGCCGCCTCCGCCTCCCCCTCCCGCTCGTGCCGTCCTCGACGACACCCTCCACCTGGTGCACGCGCGCGGGGACGGCGGGCGGAGGGAGGG
ACGGCGCCGCTCGGGAGAGGGAGCAGGAGCGCGCGCGTCGCCGGTGGCCGAGCCAAGCCGAGCTGCGTCGCGGTGGTGCTCTCCGCGGGAGGCGAGATTC
AGCCCTGATCCGAGGAAGTACTACAATGCAAGAAGCACAGAAATAGTTGAGGCAGGGGAAGCTTTGGGAATGCACTGATATGCCACTAATTGCTTACACA
CCGAGGAGCTTCTCAGCATTTGCCAAATTTGGCTTGCCAAGACAGATGCTCGTAGCTAACTATCTATTGAAACACTTGAGTTATTTTTGTATTTCTCTAC
ATGTTTAATAATAAAGCCATTTGATTCCTACTGTTATCGATAACCTCCGCTACCTTTGCATATCCAACAAGCCATTAGACGTTGATTTGCTTTGATTATT
CCCAGCTAAGTCTAACAAATGGGCTACTAGCTTGAAGAGATGGTCATCATGCAGCACTCCTTCATGATGTGCACTTTGTTATGTTTATTTTCTTGCAAGA
ACCTAACTTTTGATCCAACCATCTTTTCCATCAACAACAGCTGGCTATTACAATGTTATATGGGAATAATCTATCCCAAAGGCCATGAAGTTTCTAGAAT
GCACAACACATTGTTTAAATCTTGATTTAGTAATTCAAATTTGATAGTATAAGTAGTCTTATGTTTTATGTAAGATACAGACACTAGGTTATGTTTTCTT
GTTAGGCCAAAGGGATAATGGTCATGTACCATGCAATATATCTGCTCCCAATATGTTCTCTGTTCTCTTTTCTAGAGGACAGTCTGTTTTCTTTGTCTAT
TTGATCAATGGAAGCTCATCTTTTCTGTAGGTCATGGGCATCTATTTTCATAGGCATGGAAGTAAAAATTTTACCTGTGAAGAGTTTTGTGCACCCATGT
GTGGTGCAGAGCAATAGGGACGAGCCACCACCACCACCAGCTCATGGTTTGTCTTGCTCGCTAAGCTCGGCTCGACGCATCTGGATAGTTTTGAGACACG
AATTTGCTTATGTGGATGCGCCAACCAACCAGATCTTGAAGGACCTGAAGTCCCAAATATTATTACCACGGGTGTGCTATGCCAAATCATTCTAAACAAA
AAACCTAGCAGAATGGCATTACAGTTTGCGACAAAAGGGATGTACAGTTCAGTTGAGCACCAAGATTGATCGTAGAATTGACAACATTTGATGTATGTAT
ATATATCTGCGGAAATTACAAACAATGCCAAATCATGTCATCTAAAAATTGGCACATTCCATTTTTGCATGTTGTAGTTTCCTTGTTGGACATGAGTTTA
AACAAAGGTTTAGTCTTGGTCCTTGGATCCAAGCAATGCTTGGTAAGCCATGATATCTTCACTGAAATGTTTCATAGGATATATGTATGCAATGCAAGAA
AATTTTTGTTTGTATTATTATTGTGTAATTTACAGAACATACTTATCATTGAGGGCTTCAAATTTAACTTCAAGTATGCTATGCATAACCACTTGCAGTT
GACTATATATGTTCCCTGAAGCACATATCAGGCACCGACATTACAAATTTACAATTATCCTTTCTGCTTCCGCCA