Detailed information on CNT30118078


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0IQF7|RS16_ORYSJ, E-value = 4e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697810Oryza nivaraOryza sativa82.6491.53100519forward
CNT3043803Oryza nivaraPrunus dulcis21.1825.3881.95133forward
CNT30295032Oryza nivaraTriticum aestivum46.555.9485.96292forward
CNT30562499Oryza nivaraActinidia chinensis18.4752.2588.79116forward
CNT30232050Oryza nivaraAnanas comosus52.2328.885.67328forward
CNT30365247Oryza nivaraSorghum bicolor53.9849.9391.15339forward
CNT30620437Oryza nivaraCajanus cajan22.2919.6483.57140forward
CNT30120766Oryza nivaraCitrus clementina20.3823.6681.25128forward

Expression of CNT30118078

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MSMSLKRERPASRMGSNALRRSISGLISSIGTPFTLISPRPGLQ*

Sequence

>CNT30118078
TAGTAGAGTCTTAAACATTTCAATCACATCCATTTCACAATGTCAAAAAGGCAAGGTTCAGGGCTAAGTTTTAAAAGACTAAACTTGAAAGTAATGCAGT
AGCTAGATAGATGTAGAACAAGCCAAGTAGCTCCATTGATAGGGTGGAAAAGAGAACACCGCTCCGAATCGGTCCGGCGAGCGCTCAGCGGTACGACTTC
TGGAACCTTGCGCGGGCGCCGCGACCACCGAACTTCTTGGGCTCGCAGCGCCTGGGGTCGGCGACGAGGGCCTTGGCGATGGCCTGGCGGATCGCGTAGA
TCTGCGACGTCTTCCCACCGCCGCGGACGCGGATCCTCATGTCGATGTCCTTGAAGCGCGAGCGCCCCGCGAGCAGGATGGGCTCGAACGCCTTGAGGCG
GAGCATCTCCGGCCTGATCAGCTCGATCGGGACGCCGTTCACCTTGATCAGCCCGCGCCCCGGCTTGCAGTAGGAGACGGCCACCGCCGTCTTCTTGCGC
CCGAAGCACTGGACCGTGCCTGGCGGCGGGCGGGTGAGCGCGGCGGCCATGGTTGCGGTGGTGGCGCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCTAGG
GCTCAGGCAGCTTGGTGCGGGAGAGAGG