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Detailed information on CNT30118067


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697610Oryza nivaraOryza sativa25.9223.8398.91183forward

Expression of CNT30118067

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MNHKFLKKTNKQRAQAVRPSPFRPPRAQVAAPARSPPSRPPCAHAAQPSPSRPPRAQAARPPPPGYRPPGLRVRRPLLPPGRRQPREREIEERTW*

>peptide 2 (61 aa)
LMSKRVAAVPVGHYFFFFIFFLCSLHFDFPNRFVSYISPTISPNHPQIKVASQIIDSHHKF*

>peptide 3 (73 aa)
MRARRPAVALPASARAGRPAAASWLSPSRPPRAQAAAPARPTPTQRARDRGEDVVGGGGGGAEGEERGRGKKG*

Sequence

>CNT30118067
CTTATGTCAAAGAGGGTAGCGGCAGTTCCGGTTGGTCACTATTTTTTCTTTTTTATATTTTTTCTTTGCTCACTACATTTTGATTTTCCAAATCGATTTG
TTTCCTACATATCCCCAACCATATCCCCAAATCATCCACAAATCAAAGTAGCATCACAGATCATAGATTCACATCACAAATTCTAAAAAAAAAATACATC
ACAAATTCTCAAAGAAATACATCACAAATCCAATACATCTCGGATCAAATCCAATGAATCATAAATTTTTAAAAAAAACAAACAAACAGCGCGCGCAGGC
CGTCCGGCCGTCGCCCTTCCGGCCTCCGCGCGCGCAGGTCGCCGCGCCCGCCCGGTCGCCTCCCTCCAGGCCTCCATGCGCGCACGCCGCCCAGCCGTCG
CCCTCCCGGCCTCCGCGCGCGCAGGCCGCCCGGCCGCCGCCTCCTGGCTATCGCCCTCCCGGCCTCCGCGTGCGCAGGCCGCTGCTCCCGCCCGGCCGAC
GCCAACCCAGAGAGCGAGAGATAGAGGAGAGGACGTGGTAGGAGGAGGAGGAGGAGGCGCGGAGGGGGAGGAGAGAGGAAGGGGGAAGAAGGGGTGAGGA
GAAGGATAGAGGAGGCTGAGATGAGACCGAGATGAAGGGGAGGAGGCTGTTTAATGGGAGGGGAGGAGAGAGGAAGGGGGAGGGATAAGACCGAGATGAG
ACTGGC