Detailed information on CNT30118058


BLAST search results

BLAST vs Swiss-Prot:
sp|P81651|NLTP1_PRUAR, E-value = 2e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697800Oryza nivaraOryza sativa66.4852.36100355forward
CNT30677319Oryza nivaraSetaria viridis12.9225.2785.5169forward
CNT30136898Oryza nivaraLolium perenne10.1122.4188.8954forward
CNT30342139Oryza nivaraEragrostis tef18.7329.7687100forward
CNT30367194Oryza nivaraSorghum bicolor13.6730.887.6773forward
CNT30597178Oryza nivaraOryza meridionalis23.4138.1193.6125forward
CNT30371396Oryza nivaraOryza glumipatula66.2951.6899.15354forward
CNT30109910Oryza nivaraOryza longistaminata17.640.6996.8194reverse complement
CNT30104684Oryza nivaraOryza rufipogon47.3882.95100253forward
CNT30578372Oryza nivaraOryza barthii5320.786.22283forward

Expression of CNT30118058

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MHGAIADPTCPHVIAADAPGAATTIAITITAATALKFKAAISI*

>peptide 2 (31 aa)
LGPSLDKMRFINVGLHVHRAVYRLKKIKIAC*

>peptide 3 (62 aa)
MLMHARSVQHKSVERLMGKPTLTPHLPGMPAAAWRSAVVRAALFSPLTPLQHPWVRPPLPVT*

Sequence

>CNT30118058
GCTAGGTCCAAGTCTGGACAAGATGCGATTCATCAACGTAGGATTACACGTACACAGAGCAGTGTACAGACTCAAGAAAATTAAGATAGCATGCTGATGC
ACGCACGGAGCGTGCAACATAAATCAGTGGAGAGGCTGATGGGGAAGCCGACGTTGACGCCGCACTTGCCGGGGATGCCGGCGGCGGCCTGGCGGTCAGC
GGTGGTGCGGGCGGCGTTGTTCAGCCCCTTGACGCCGTTGCAGCATCCCTGGGTGAGGCCACCCCTCCCCGTCACGTAAGAGATGCACGGCGCGATCGCC
GACCCCACCTGCCCGCACGTTATCGCCGCCGACGCCCCCGGCGCCGCCACCACCATCGCCATCACCATCACGGCGGCCACCGCCTTGAAGTTCAAAGCCG
CCATATCTATCTAGACTGATGGATGATCGATCGAGTAGCTAGGTAAGCTTCGTTCAGTCAGCGTCTCCTCGTCGCCGGCGATGGATGGATCGTCGGTCGA
TGGGTGGAGGGTACGTATAAATAGGAAAGGCAAC