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Detailed information on CNT30118050


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002688, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691667Oryza nivaraOryza sativa22.0320.0399.35308forward
CNT30100070Oryza nivaraOryza rufipogon14.4510099.01202reverse complement

Expression of CNT30118050

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSFQAHHMRCAPHLIKLVVKGGNWIGRGIH*

>peptide 2 (37 aa)
MRNYSVMFGAVQEEAEFHGVISSSPYEMCSSFDQIGC*

Sequence

>CNT30118050
TCTCACTGTAACTGAATGCAGGTAGTTAGATTATTTTTATTTATCATGCTTTGCATCTAAATTTTGCCATATATAAATTTGTGCTAGATGTAATTTTTGA
CAAATATCAGAGATGGTGCATAATAATAGGTAAGCATGATTTTTCTAACCTTCAACTGTCTTCTTGATTTTTAATTCTTCAGACTCGATTATGTCTCTTA
TACATGTCTTTGATTGTGTATTCCCTGTAACTTAAGCATGTAATCTATGACATCCTGCATGTTTGGGTCATTTTATACTATGTTACAATCTGGAATAATG
TTGATTCTATCGAAAGAGTACTGAATTTCTACGAGAAAGTTAAGCATGATTCTAGTTACAGTCCATATGCACTGTAGTTACAGTTGTAGCTTTTGTTATT
TTTCCCTGTAACAGAAATGCATGTATAGGTTATATGTAATATATTTTTAGAACATGTTAGAATAGGAAGTAATGCATGAGTACTGAAATTTCTGAGAGAA
GCTATAGTAGGAATTAATGCTGATGTTATTGCGTTAGTACTGAAATGAAAATTCAACACAAGTATGTTCGGTGCATGTTTTGTGTTTATATAAGTACTTA
ATTTTTTATTTCATTTGAATAGGAAAATCTGCATATAGTTTAGTGACATAATTTTGTAATTATGTCATTAGATTCTTTGCAGATTTTGTTGCTCAAATGT
AGTCAAAAATTAGATCTGTTATAGTTCAACTTTAGTTGCATAGAAAGTTTAGAATGCAAGCCCACTATAATTACAATGTTTCAATAGTATCTTGAAAGAT
TTTGCATGAATACTGTAATAACAATGCCATTCTAATCTGGAACAACTTTGGTGTTCTGAATTTTGGTTTCTTCAGTATGTTTTGCCATAATATTGCTCTT
ATCTGATTCTTGGCTTTTTTTTTTTGCACATCTTGTACTGCTTCATGACCAGCAACTGGAGAAAATTGAAGTTTTCATGAGAAACTACAGTGTTATGTTT
GGTGCTGTTCAGGAAGAAGCTGAGTTTCATGGTGTCATTTCAAGCTCACCATATGAGATGTGCTCCTCATTTGATCAAATTGGTTGTTAAAGGAGGTAAT
TGGATTGGGCGTGGGATTCACTGAAGATTTCATTATTTTGACTTTGATTTATCTGAAGAAATATATTGTTGCTTCGGTGATTTGAGACTGTAAATCTGTA
ATATGCATTTTGTTTTCTTGTTTGGAAGATGTAACCGGATTGGGTTTGGAATTCACTGAAGATTTCACATATTCTCTATCACTGATGGTGTACAGTGTGC
TATCTAAAAGTTGTGTATCATTTCCTAGCTAATTGTAATCATGAAGTTGTCTATTTAAATAATGTAGGGTGCAAGCTTGTTGTATTTTTACTCAGAAG