Detailed information on CNT30118046


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697771Oryza nivaraOryza sativa82.1100100321forward
CNT30677224Oryza nivaraSetaria viridis14.8325.7889.6658forward
CNT30296412Oryza nivaraTriticum aestivum38.8733.9386.84152forward
CNT30391100Oryza nivaraTriticum turgidum39.1325.1685.62153forward
CNT30438855Oryza nivaraAegilops tauschii38.8728.2585.53152forward
CNT30663481Oryza nivaraTriticum dicoccoides38.3628.5786.67150forward
CNT30138781Oryza nivaraLolium perenne20.4613.5688.7580forward
CNT30352984Oryza nivaraEragrostis tef21.9914.786.0586forward
CNT30111027Oryza nivaraOryza longistaminata74.4266.4495.88291forward
CNT30104515Oryza nivaraOryza rufipogon10079.1599.49391forward
CNT30578311Oryza nivaraOryza barthii97.785.2795.55382forward

Expression of CNT30118046

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MNSSQVDDNSVASHWRHPICWHRSRTHRRHARHPHWRWRTAHTRRSRQGKRKQLGIHVLHH

>peptide 2 (30 aa)
MPGIPIGGGGPPIPGGAGKARGSNWAYMFCT

Sequence

>CNT30118046
CAGCTCCCGCTCAACCTAACAACCATCCCTCATCCTATCCCATCGTAATATAATATATATAGCAACCAGCAATTAACTCGACCTGGCTAGAGATTTCACT
CGCCAAAATTGTCCTGGTACCAAAAGAATCAGTTTAAACAACCAATAATAGCACATCTACAACTTGAAAGATGCCTCCTCTTCTGTGTAAATTGAAATTC
TTATCTAAATGAACTCTTCACAAGTGGATGATAACTCAGTAGCTTCCCATTGGAGGCATCCCATATGCTGGCATAGGTCCAGGACCCATCGGAGGCATGC
CCGGCATCCCCATTGGCGGTGGAGGACCGCCCATACCAGGAGGAGCAGGCAAGGCAAGAGGAAGCAATTGGGCATACATGTTCTGCACCAT