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Detailed information on CNT30118042


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697812Oryza nivaraOryza sativa19.8125.8399.19124forward
CNT30108806Oryza nivaraOryza longistaminata21.4142.6895.52134reverse complement

Expression of CNT30118042

Peptides detected in this lncRNA

>peptide 1 (29 aa)
YSVYVCTSHPNQHQLGKLTLPSHLDTIIR*

>peptide 2 (70 aa)
MGTPPGRGRRRRGRRRAAAARRRAARRGSPAFSAFVSSRSFSTFVSSFTGGGCSASPRRWPATATASPPL*

Sequence

>CNT30118042
CATACTCAGTATACGTATGCACGTCACATCCTAATCAACATCAGCTAGGTAAATTAACCTTGCCAAGCCATTTAGATACAATTATCAGATAATACTAGGT
TTTATACAATTTTTGCAGGTACACCAATGCTCTCGTACAAAATCAAGGCGTAGGGTAGGGGCACAGTAATTGATATACACACTAATTGCAAATTAAGTGG
TAATTAATCACTCAAAGCTAAGGCAGTGAGCATGTAATCGCTTCAGCTGGACGAGCTCTGGAGCTTGGACACGAAGCTGGAGGCGGCGAAGGCGGTGGAG
CCACCGACGACGCAGGCGAGCGCGACCACGGCCTGGACGGCGACCTCCCATGGGTACTCCTCCGGGACGAGGTAGACGACGGCGGGGCCGGCGGCGAGCA
GCAGCAGCGCGACGCCGAGCAGCGCGCCGGGGGAGCCCCGCCTTCTCCGCCTTCGTCAGCAGCCGCAGCTTCTCCACGTTCGTCAGCAGCTTCACCGGCG
GCGGCTGCTCGGCCTCGCCGCGACGGTGGCCGGCGACAGCGACGGCATCGCCACCGCTCTAGCTGCGTCCATCACCATGGATGGATTCCCTCTCCTACCA
CCACACGTACACCTCTCGTTCTTCTC