Detailed information on CNT30118040


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30104750Oryza nivaraOryza rufipogon99.699.9299.841245forward

Expression of CNT30118040

Peptides detected in this lncRNA

>peptide 1 (69 aa)
QPLSPSSHAPPPPQPQPWAPPRCRSSTRASIPRLSPPHRTRSTSASLARHGDWGGRNLFGASVDILAGE*

>peptide 2 (73 aa)
SLSPPLPTRRHRRSRSLGLLRAADRRRGLRFRASPLLTAPDPHPHRWLGMGIGEGGICSVPRSISSPGSRLLV*

>peptide 3 (83 aa)
MLPLHHVQMRISAVREEEGDTLRCLCLRPSRRLIHLSLRPLPLAPLRCHHHLILPAGPGLSSSLSAISSVQRSLDKPGLKCAA*

>peptide 4 (97 aa)
MEVSLPTALAVGGATGGEVVETSSSAGPPHASPPPCPDAHLCCERGRGRHPAMSLLASKSAANPPEPATTASCSTSVPPPPHPPSRPWPLVLTICHL*

>peptide 5 (47 aa)
MYTRQWYGHACPINLASTLMDYSCGIWEANLMDYSCGNWEVNNSSKE*

>peptide 6 (47 aa)
ASLPLFPRAATAAAAALGSSALQIVDAGFDSAPLPSSPHQIHIRIVG*

Sequence

>CNT30118040
CAGCCTCTCTCCCCCTCTTCCCACGCGCCGCCACCGCCGCAGCCGCAGCCTTGGGCTCCTCCGCGCTGCAGATCGTCGACGCGGGCTTCGATTCCGCGCC
TCTCCCCTCCTCACCGCACCAGATCCACATCCGCATCGTTGGCTAGGCATGGGGATTGGGGAGGGAGGAATTTGTTCGGTGCCTCGGTCGATATCCTCGC
CGGGGAGTAGATTGTTAGTTTGAGATGGAGGTATCGTTGCCAACTGCTTTAGCAGTTGGTGGTGCTACCGGCGGCGAGGTGGTCGAAACCTCCTCGTCTG
CTGGACCACCGCATGCTTCCCCTCCACCATGTCCAGATGCGCATCTCTGCTGTGAGAGAGGAAGAGGGCGACACCCTGCGATGTCTCTGCTTGCGTCCAA
GTCGGCGGCTAATCCACCTGAGCCTGCGACCACTGCCTCTTGCTCCACTTCGGTGCCACCACCACCTCATCCTCCCAGCCGGCCCTGGCCTCTCGTCCTC
ACTATCTGCCATCTCTAGTGTTCAGAGATCCCTGGACAAGCCAGGACTTAAATGCGCTGCCTAAGTGCTTCTACCCAAGTTGATAGAACCGTGTTCAATG
TATACCAGACAATGGTATGGCCATGCATGTCCCATTAATCTGGCCTCTACTTTGATGGACTATTCTTGTGGGATCTGGGAAGCAAACTTGATGGACTATT
CTTGTGGGAACTGGGAAGTAAACAACAGTTCTAAGGAGTAACCAACAATTCCTTCTATAGTTTTGTGTAAAGTATTAAATTGCTACCCCTCTTATATGCA
TTTAAATGTGTCATGTGTATCACAAATAGTTGAGTATTCTTTCAACTAGTGACCCATTGCCACAGGTCTGCTCACTAATCCAATGATCTTGGCCAGGTCA
ATTATTCCATTGGGCTATGTCTGAGTCCTGCAAGATATTCTTTTTGCTACCAGCTAAAGGGATCTGATTTGCACCAGTGCCATCGGATAGTCACCTGTGC
TGGACTTCCAAGTCAACCGGCTTATTTGCTAATCATTAAGAGGGGTGGTCAAACTGCCTACAACGCCGTCCATCTACTTTTTATTTTTTGTTTGCACGAC
TTCTTGGTTGCCTAAGCTTGTAGGCAGAGGAAGTAATGCTCAAATTCATCTCAATTTTAGTTGTTTCTGAGATTGGTATTTCAATTGTTCCATATTAGAT
TGGCATCAAATTGATTAACTGAACTTGGATGTGTCAATGCATTTCAATCC