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Detailed information on CNT30118036


BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 1e-122

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521203Oryza nivaraSetaria italica20.5816.2786.67150forward
CNT30555750Oryza nivaraOryza glaberrima97.1247.2394.92708forward
CNT30371494Oryza nivaraOryza glumipatula60.6364.5398.87442forward
CNT30104733Oryza nivaraOryza rufipogon55.0165.9597.51401forward

Expression of CNT30118036

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MHLILPPLLTLPKPELVERRLTGRPAVDLSPWNGATEVAEEAITVGAIAT*

>peptide 2 (54 aa)
MKLINCTCLTLSKPMMRTKASGYAFFASSSSLSTWVASVHPNMGSFHMVQYLPS*

Sequence

>CNT30118036
CATGCACGAAGGAACGAAAGCGCTTAGTTGCCGCCTGACTCCTCGCAACCCGGTGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTAACGTTGT
CAAAGCCAATGATGCGAACGAAGGCATCAGGGTATGCCTTCTTTGCCTCCTCGAGCTCCTTGAGCACTTGGGTGGCATCGGTGCATCCAAACATGGGCAG
TTTCCACATGGTCCAGTACCTACCGTCATAGTATCCGGGTGATCTGTGATTCTCACGGTAGACGAATCCGACCTTGCTGAACTCCAAGCAAGGCACCCAC
TTAGATCGGAGCAGGTACTCGATCTGCTTCAAAAGATCCTCCACGGTGAGTGGTGGCAGGTACGATAGGGTCTCGAACTTCTTGATGCCCTCAATTGGCC
ACACCTGAATAAATAATGTAAAAATTTAAATCAGGTTAATTTGAATTTCGTAACATGAGTTAATTTGATCCTTGACTTTAAAGGAGAAGCCTGAGGAGGT
ATATATCATATATACCTGCATGCACTTGATCCTTCCGCCATTGCTGACGTTGCCGAAGCCCGAGTTGGTGGAGCGGCGGCTGACGGGGAGGCCGGCGGTG
GACTTGAGCCCTTGGAATGGAGCCACGGAGGTGGCCGAGGAGGCCATCACGGTGGGGGCCATAGCCACGTAGTTAGTTAGCTAGCTTACTGGCTAGTAGT
AGTAGAGTATGTCCAGTAGCAGTGCTGTT