« Back to Oryza nivara search


Detailed information on CNT30118029


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002489, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697308Oryza nivaraOryza sativa75.647.7593.07880forward
CNT30552239Oryza nivaraOryza glaberrima75.653.1492.84880forward
CNT30596758Oryza nivaraOryza meridionalis75.4391.4692.14878forward
CNT30106623Oryza nivaraOryza longistaminata70.175.1492.52816forward
CNT3099966Oryza nivaraOryza rufipogon75.662.3292.39880forward
CNT30574647Oryza nivaraOryza barthii75.645.7192.5880forward

Expression of CNT30118029

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MLHIHISLYVQVHDVIHVSFFRKFLFTLFKYHA*

>peptide 2 (30 aa)
LQPALAAPARLPSPPSSQLPPPSLRRRHGP*

>peptide 3 (82 aa)
TASPSRSCALAVAALVPVAAAVFAPPPRAIAGDRSHHHPSQLVFSFHFPCSREKGTERLYRGKKERKRQSNVEEFQRFRKLG*

>peptide 4 (75 aa)
MDKLCYFVWFHLPNYYSKLPIINYVVLVLCYIFIFHFMFKFTTLFMFHSSGSFCLHYSNTMRSHGSAIWIFIHDP*

Sequence

>CNT30118029
CTACAGCCAGCCCTAGCCGCTCCTGCGCGCTTGCCGTCGCCGCCCTCGTCCCAGTTGCCGCCGCCGTCTTTGCGCCGCCGCCACGGGCCATAGCCGGAGA
CCGCAGCCACCATCATCCATCACAACTGGTGTTTTCTTTCCATTTTCCTTGTTCCAGAGAGAAGGGTACAGAGAGATTGTACAGGGGGAAGAAGGAAAGG
AAAAGACAGAGTAACGTTGAGGAATTTCAGCGATTTCGCAAATTAGGGTAATTTGTCGCAAGTTGTTGAGGGTTCCAACATTGGAGGAGTTGAGTCGGAT
TATCGAAGGAGTTAAGGCAAGTACAATACGGACTTGTGTGATGGATAAACTGTGTTACTTTGTTTGGTTTCACTTACCCAATTATTATTCGAAGCTTCCT
ATTATCAATTATGTAGTGTTGGTATTATGCTACATATTCATATTTCACTTTATGTTCAAGTTCACGACGTTATTCATGTTTCATTCTTCCGGAAGTTTTT
GTTTACATTATTCAAATACCATGCGTAGTCATGGGAGTGCAATTTGGATCTTTATTCATGATCCTTGAGAAGCGTTGATCACGCTTGCTCGGCTTACCGG
TAATGCTAAAAGGATATTCACACCTGCCCGGAAGGGAACTACTACTTTTTGCCTCCTTCGTTTTAAATTAAAGGAAGTCAAATGTTCCATATTGGTTTTC
TTATTGCATTAAACCTGTGTATATTTTACTAGTTCAATATTGTACTTGCTGAGTATTCTTTACTCATTCTTGTGTTTTATTTGGTTTTTAGGTACCTAAT
GATATTGATTGGCATGGGAAGGGAGTAGCACCCTTGAACTACACATTATTATTGCACACTATTGAAATTTAGTTTTAGACTATGTTTCTGCTTAGCATAA
GTTTTGCGTAGAACTTGTAACGGTCATTTAAAGTTCTGGTCCTTATTTTCGAGTGGAATTTGTGGAGGTAGGATGGTTTGGATTGCGTGGATTATACTGT
TATTGAGTTATCTTATAACTTTCTGTCGTGGATGTCCGTATTTTTAGGGGAGACTCTGTCGAAATTTCTAATAATTTTTGGAGTTAGTGGTTTTTGAGTG
TATTTTGGTGTGGCACTCTAGGTACATGGCTACCTGGGGTGTTACACTTAGCAGCTCGTCCGAG