Detailed information on CNT30118027


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0IQK9|NLTP1_ORYSJ, E-value = 2e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30352811Oryza nivaraEragrostis tef27.0313.490100forward
CNT30371449Oryza nivaraOryza glumipatula69.4683.4494.94257forward
CNT30104032Oryza nivaraOryza rufipogon64.0596.7390.3237forward
CNT30578426Oryza nivaraOryza barthii32.1633.15100119forward
CNT30582166Oryza nivaraEchinochloa crusgalli20.2711.9694.6775forward

Expression of CNT30118027

Peptides detected in this lncRNA

>peptide 1 (85 aa)
PGAVDGSADGVGDADAALGGDAGGVAGVEPLDAAGRVLEAPHAAAAGPDGGVDLAAGDGHGGVRGGEEQSCHQGDQHQLCTGHAS*

>peptide 2 (66 aa)
MLAALPALSPLMPRAAFLRLLTPLQQGPTAELTWPQVMATAACGAARSRAATRATNTNCARAMLPS*

Sequence

>CNT30118027
CCTGGAGCAGTCGATGGAAGCGCTGATGGTGTAGGGGACGCTGACGCCGCACTTGGAGGGGATGCTGGCGGCGTTGCCGGCGTTGAGCCCCTTGATGCCG
CGGGCCGCGTTCTTGAGGCTCCTCACGCCGCTGCAGCAGGGCCCGACGGCGGAGTTGACCTGGCCGCAGGTGATGGCCACGGCGGCGTGCGGGGCGGCGA
GGAGCAGAGCTGCCACCAGGGCGACCAACACCAACTGTGCACGGGCCATGCTTCCTAGCTAGTACTGTTGATCTAGTTGCTGGATCGATCGATCGATCGA
TCGGTGCGAATCGGTTGCTGATGATGAGATGGATGAGGAGAATACGCGGGAATGCAGGGGCTTAAATAGG