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Detailed information on CNT30118025


BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 6e-82

BLAST vs NONCODE:
NONORUT002193, E-value = 3e-151

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672821Oryza nivaraSetaria viridis25.4138.7484.01294forward
CNT30521106Oryza nivaraSetaria italica25.4140.5584.01294forward
CNT30180337Oryza nivaraSecale cereale24.1119.4786.38279forward
CNT30290030Oryza nivaraTriticum aestivum26.1960.1285.81303forward
CNT30221752Oryza nivaraHordeum vulgare25.9344.8487300forward
CNT30386363Oryza nivaraTriticum turgidum26.1942.9885.81303forward
CNT30555642Oryza nivaraOryza glaberrima60.4171.1196.42699forward
CNT30436411Oryza nivaraAegilops tauschii25.9345.5286.33300forward
CNT30248284Oryza nivaraAvena sativa25.9339.9585.67300forward
CNT30658325Oryza nivaraTriticum dicoccoides26.1941.9786.14303forward
CNT30136970Oryza nivaraLolium perenne26.0247.184.05301forward
CNT302730Oryza nivaraZea mays2851.2782.41324forward
CNT30648517Oryza nivaraRosa chinensis18.6742.3587.5216forward
CNT30681645Oryza nivaraTriticum urartu25.9320.5186300forward
CNT30721860Oryza nivaraTriticum spelta25.9352.2686300forward
CNT30351770Oryza nivaraEragrostis tef24.8129.4185.37287forward
CNT30597241Oryza nivaraOryza meridionalis51.4368.3198.32595forward
CNT30150944Oryza nivaraBrachypodium distachyon25.5844.3189.19296forward
CNT30104669Oryza nivaraOryza rufipogon52.9873.9498.69613forward
CNT30557165Oryza nivaraPanicum hallii24.6365.9783.86285forward
CNT30551876Oryza nivaraOryza brachyantha25.1533.8494.5291forward

Expression of CNT30118025

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MHLILPPLLTLPKLELPERRATGMPAVDLSPWKGATVVADDAITEGAISAAHQALSFFARVLLEMHCSAHRLPRYV*

>peptide 2 (54 aa)
MKLMSCTCLTLSKPMIRTNASGYAFLASSSSLSTWVASVHPNMGSFHMVQYLPS*

>peptide 3 (48 aa)
MAAALASRGGRGCGRIGRRARAYPRAFVAGSRARGGVAPGSWVVAVVAS

>peptide 4 (38 aa)
MPHPTTYSRSRYHSYIKSERDQVKQKQKQSTAGKIKRR*

>peptide 5 (73 aa)
MCVGSVGNYLHAPDPAAIADVAEAGVAGAAGDGHAGGGLEPLEGCDGGGRRRHHGGGHLCSSPSSLLLCSSTS*

Sequence

>CNT30118025
TGATTTTTTAATTCCATGATCAAATTTTCATTGTCGACGAATTGATTGTTGGACACATATGCTCTAGGATTCACATCCATCTCATACCCTTTGTATAAAT
ATATATAGCCGGAGCTTTCATAGATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACATCAAGTCAGAGAGAGATC
AGGTGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGCTATATATGACGATGACGGCT
TAGTTGCCACCAGACTCCTCGCAGCCCGGGGGCTTGTAGGCGATGAAGCTGATGAGCTGCACCTGCCTAACGTTGTCGAAGCCGATGATACGGACGAATG
CATCAGGGTACGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCGTCGGTGCACCCGAACATGGGCAGCTTCCACATGGTCCAGTACCTGCC
GTCGTAGTATCCAGGGGACCTGTGGTTCTCACGGTAGACAAATCCGACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAACGGAGCAGGTACTCGATC
TGCTTCAGGAGGTAGGAGAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGAATGAATAAACGATAATTGAGTTGTTGGTTAATGTTGGTTA
AGAAGAAGAAGAAGAAGAAGAAGAATGTGTGTTGGATCAGTAGGTAATTACCTGCATGCACCTGATCCTGCCGCCATTGCTGACGTTGCCGAAGCTGGAG
TTGCCGGAGCGGCGGGCGACGGGCATGCCGGCGGTGGACTTGAGCCCCTGGAAGGGTGCGACGGTGGTGGCCGACGACGCCATCACGGAGGGGGCCATCT
CTGCAGCTCACCAAGCTCTCTCCTTCTTTGCTCGAGTACTTCTTGAGATGCACTGCTCTGCACACAGGCTCCCGCGGTACGTATAAATAGCCAAAACTCA
GCGGATCGGATGGCAGCGGCGCTCGCGAGCCGCGGAGGCCGGGGATGTGGTAGGATTGGCCGGCGTGCGCGCGCCTATCCGCGGGCGTTTGTGGCTGGCT
CACGCGCGCGCGGTGGTGTCGCGCCGGGCTCGTGGGTTGTGGCCGTGGTGGCATCTC