Detailed information on CNT30118019


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QLY5|METE1_ORYSJ, E-value = 2e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672500Oryza nivaraSetaria viridis58.2463.6692.2205forward
CNT30404178Oryza nivaraBeta vulgaris20.1718.4988.7371forward
CNT30563287Oryza nivaraActinidia chinensis30.1122.8485.85106forward
CNT30555769Oryza nivaraOryza glaberrima10082.8299.43352forward
CNT30440702Oryza nivaraAegilops tauschii76.1481.2192.54268forward
CNT30721908Oryza nivaraTriticum spelta76.1484.5492.54268forward
CNT30361575Oryza nivaraSorghum bicolor79.8343.9790.04281forward
CNT30597233Oryza nivaraOryza meridionalis10095.6598.58352forward
CNT30323712Oryza nivaraAsparagus officinalis99.4398.0482.86350forward
CNT30104304Oryza nivaraOryza rufipogon99.7299.1598.86351forward
CNT30578494Oryza nivaraOryza barthii10099.1599.43352forward
CNT30333334Oryza nivaraCynara cardunculus98.8643.6181.9348forward

Expression of CNT30118019

Peptides detected in this lncRNA

>peptide 1 (33 aa)
VGVKPLGHLHSRDSGISPSHREVGAEPNLSTSP*

>peptide 2 (29 aa)
MSSALGQHQAWQTCQEPDHSTRRCCWGCT*

>peptide 3 (53 aa)
MYLIPASAICFQMLALRSVATFSKSSALLFPSQKDSRANLSSLLGPMRGYPTM*

Sequence

>CNT30118019
TAGTTGGTGTCAAACCACTTGGTCATCTCCATAGCAGGGACAGTGGCATTTCCCCTAGCCATCGAGAAGTAGGTGCTGAACCCAATCTCTCCACCAGTCC
ATGAGTAGCGCTCTGGGACAGCACCAAGCATGGCAGACGTGTCAAGAACCTGATCATAGTACGAGAAGGTGTTGCTGGGGATGTACTTGATCCCAGCGTC
AGCCATTTGCTTCCAGATGCTGGCCCTGAGGTCGGTCGCAACCTTCTCCAAATCCTCAGCACTGCTCTTCCCATCCCAGAAAGACTCCAGGGCAAACTTG
AGCTCCCTCTTGGGGCCCATGCGGGGGTACCCAACAATGTGAGACGCCATCT