CANTATAdb - search

Detailed information on CNT30118016

BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 3e-91

BLAST vs NONCODE:
NONCQUT000389, E-value = 1e-23

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30597219	Oryza nivara	Oryza meridionalis	100	72.26	99.6	758	forward
CNT30104481	Oryza nivara	Oryza rufipogon	60.55	56.95	99.13	459	forward
CNT30604884	Oryza nivara	Oryza punctata	66.09	73.46	93.01	501	forward

Expression of CNT30118016

Peptides detected in this lncRNA

>peptide 1 (65 aa)
PDSSQPGGLYAMKLINCTCLTLSKPMMRTKASGYAFFASSSSLSTWVASVHPNMGSFHMVQYLPS*

>peptide 2 (50 aa)
MHLILPPLLTLPKLELLERRFTGRPAVDLSPWKGATEVAEEAITVGAIAT*

>peptide 3 (28 aa)
MSSSSAVEALYAGSPAAYINSNRIMSFHP

Sequence

>CNT30118016
CGCCTGACTCCTCGCAACCCGGTGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTAACGTTGTCAAAGCCAATGATGCGAACGAAGGCATCAGG
GTATGCCTTCTTTGCCTCCTCGAGCTCCTTGAGCACTTGGGTGGCATCGGTGCATCCAAACATGGGCAGTTTCCACATGGTCCAGTACCTACCGTCATAG
TATCCGGGTGATCTGTGATTCTCACGGTAGACGAATCCGACCTTGCTGAACTCCAAGCAAGGCACCCACTTAGATCGGAGCAGGTACTCGATCTGCTTCA
AAAGGTCCTCCACTGTCAATGGCGGCAAGTACGACAGAGTCTCGAACTTCTTAATGCCCTCAATCGGCCACACCTGATTGAATGAATTGATGCAGATAAT
AGAATCGGGCCAACATTAAATATATATGAACAACGAGCACTTTGAAGGAGAAATTGAAACGTATCGTTTCTGATACCTGCATGCATCTGATCCTTCCGCC
ATTGCTGACGTTGCCAAAGCTCGAGCTGCTGGAGCGGCGGTTCACCGGGAGGCCCGCAGTGGACTTGAGCCCCTGGAAGGGAGCCACGGAGGTGGCCGAG
GAGGCCATCACGGTGGGGGCCATAGCCACGTAGTTAGTTAGCTAGCTTACTGGCTAGTAGTAGTAGAGTATGTCCAGTAGCAGTGCTGTTGAGGCCCTGT
ACGCTGGTTCACCAGCAGCTTATATAAACAGCAATCGTATCATGTCATTTCATCCATG