Detailed information on CNT30118011


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3071898Oryza nivaraQuercus suber22.4723.8684.2789forward
CNT30224824Oryza nivaraHordeum vulgare38.1327.486.75151forward
CNT3068273Oryza nivaraLeersia perrieri98.9951.8587.76392forward
CNT30371297Oryza nivaraOryza glumipatula77.7887.2584.09308reverse complement
CNT30105029Oryza nivaraOryza longistaminata92.1779.1889.86365forward
CNT30104659Oryza nivaraOryza rufipogon99.4981.499.49394forward
CNT30578572Oryza nivaraOryza barthii99.7584.499.75395forward
CNT30582636Oryza nivaraEchinochloa crusgalli31.0625.3194.31123forward
CNT30496955Oryza nivaraDigitaria exilis31.3127.5690.32124forward
CNT30593120Oryza nivaraEragrostis curvula18.9426.59675forward
CNT30604793Oryza nivaraOryza punctata74.7563.9390.2296forward

Expression of CNT30118011

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MNIQSFASIIPPDVTWKTSSPSGRLGASKILQTRCSPFPFLSIN

>peptide 2 (37 aa)
SGESYHHVNLLYIFHLRQYCICFSTTVDLISIEKYPF*

>peptide 3 (30 aa)
MQEFTRRNLNNLKTGSTLNEHSVFRIHYST*

Sequence

>CNT30118011
TTCTGGGGAAAGTTACCATCATGTAAACCTCTTATATATTTTTCACTTAAGACAATACTGTATTTGTTTCAGTACAACTGTTGATCTCATAAGCATAGAA
AAATACCCATTTTAAGGTATAATCGTCTGGATAAATGAGGTTGCATATTTCCTCGACAGTGGCAAAGTAGCAGTAGTAGTTTAGTCAATGTACCAAACCT
ATATGGCCTATGCAGGAATTTACTAGGAGAAACCTGAACAATTTGAAGACAGGAAGCACCCTCAATGAACATTCAGTCTTTCGCATCCATTATTCCACCT
GATGTTACCTGGAAAACGTCTTCTCCCTCAGGCAGGTTAGGGGCATCAAAGATCTTGCAGACACGCTGCTCTCCTTTTCCTTTCCTCAGCATCAAC