Detailed information on CNT30118004


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697916Oryza nivaraOryza sativa55.0128.3999.51203forward
CNT30597117Oryza nivaraOryza meridionalis31.4423.2987.07116forward
CNT30104413Oryza nivaraOryza rufipogon41.1922.1699.34152forward

Expression of CNT30118004

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MILLVLDTEFGSTHRPRQNLLGGSCRRCAGLRSCLLPP*

>peptide 2 (29 aa)
MATAACGAARSRAATRATNTNCARAMLPS*

Sequence

>CNT30118004
CATGGATGCATGGTGATTGATCGAGACCTTAGCTAGCTCATCTTTTATTCCAGAATAAAGATATGATACTACTAGTACTGGATACAGAATTCGGCTCCAC
ACATCGACCCAGGCAGAATCTACTAGGTGGCAGTTGCAGGCGGTGCGCCGGTCTGCGGTCGTGCTTGCTGCCGCCTTGAGGCTCCTCACGCCGCTGCAGC
AGGTGATGGCCACGGCGGCGTGCGGGGCGGCGAGGAGCAGAGCTGCCACCAGGGCGACCAACACCAACTGTGCACGGGCCATGCTTCCTAGCTAGTACTG
TTGATCTAGTTGCTGGATCGATCGATCGATCGATCGGTGCGAATCGGTTGCTGATGATGAGATGGATGA