« Back to Oryza nivara search


Detailed information on CNT30118003


BLAST search results

BLAST vs Swiss-Prot:
sp|O49290|CPPM_ARATH, E-value = 9e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371395Oryza nivaraOryza glumipatula95.26101.0896.8563forward
CNT30104432Oryza nivaraOryza rufipogon49.92101.0392.2295forward

Expression of CNT30118003

Peptides detected in this lncRNA

>peptide 1 (55 aa)
RNHAPNPNIITHTAIYSYVPCNNNTYLTKFTNNAGELINVIHQISWLPDGQPHFD*

Sequence

>CNT30118003
TGCGGAATCACGCACCCAATCCCAACATAATCACTCACACAGCAATATATAGCTACGTACCATGCAATAATAACACATACCTCACAAAATTCACCAATAA
TGCAGGAGAATTAATCAATGTAATCCACCAAATTTCATGGCTCCCTGATGGCCAGCCACATTTCGATTGATAATTTATTCCATTGGTAGCTTGATCTTGA
TCGATCTTAGTGTACCCCATTGGTAGCGCCATTGGTAGCTCCGTTTCCGGCGACGACGGCGGCCGCCTTGGCCTTAGCCTTCTCCATCTCCGTCGTGGTC
GTCGTCTCCGGCGCCGGCAGTGGCTTGGGAACGGAGGAGTTGACGGAGAAGCGGGCCTCGATGTCGAGCCAGGAGTCGAGGCCGACGAGGCGGGCGCGGG
CGGCGGCGTAGACGGTGGTGAGGGGGGACTTGATGAGGTGGAACCCCATCTCCATGAGCTCCTGCCTCGTGTGCAGCGGCGTCTTCCCGCCCTCCAGCAT
GTTGCACACGCGATAACCCTTGGTCCTCCTGCAGATCTCCATCAGCTCCTCGTCGCTCCGCGGCGCCTCCACGAAGCACGCGTCTGCTCCC