Detailed information on CNT30118000


BLAST search results

BLAST vs Swiss-Prot:
sp|O49290|CPPM_ARATH, E-value = 8e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371520Oryza nivaraOryza glumipatula29.6399.5398.13641forward
CNT30104541Oryza nivaraOryza rufipogon39.7679.7892.21860forward

Expression of CNT30118000

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSSQESRPTRRWSSSRVVSARLRAARTSTRARAAA*

>peptide 2 (66 aa)
MIYLSLEKRSGRSAYIYVEIGTPNGIIKTSDRSSVSPGHDKEVPITNDLSRCSYLHSVLLCWYHLI*

>peptide 3 (55 aa)
RNHAPNPNIITHTAIYSYVPCNNNTYLTKFTNNAGELINVIHQISWLPDGQPHFD*

>peptide 4 (41 aa)
MASSRPVTDRASVRATIKKSRSPTTSLAAAIFTACSSAGIT*

>peptide 5 (47 aa)
MLDRSDLARTCHLIHQRHIYTYKSKVVMGPPYLTVHAWYKMLGPTCH*

>peptide 6 (30 aa)
MNLLKIYSLVVKIDRSNLNESLTLKRFSRT*

Sequence

>CNT30118000
TGCGGAATCACGCACCCAATCCCAACATAATCACTCACACAGCAATATATAGCTACGTACCATGCAATAATAACACATACCTCACAAAATTCACCAATAA
TGCAGGAGAATTAATCAATGTAATCCACCAAATTTCATGGCTCCCTGATGGCCAGCCACATTTCGATTGATAATTTATTCCATTGGTAGCTTGATCTTGA
TCGATCTTAGTGTACCCCATTGGTAGCGCCATTGGTAGCTCCGTTTCCGGCGACGACGGCGGCCGCCTTGGCCTTAGCCTTCTCCATCTCCGTCGTGGTC
GTCGTCTCCGGCGCCGGCAGTGGCTTGGGAACGGAGGAGTTGACGGAGAAGCGGGCCTCGATGTCGAGCCAGGAGTCGAGGCCGACGAGGCGGTGGAGCT
CGTCGCGGGTGGTCTCGGCGCGCTTGAGGGCGGCGAGGACGTCGACGAGGGCGCGGGCGGCGGCGTAGACGGTGGTGAGGGGGGACTTGATGAGGTGGAA
CCCCATCTCCATGAGCTCCTGCCTCGTGTGCAGCGGCGTCTTCCCGCCCTCCAGCATGTTGCACACGCGATAACCCTTGGTCCTCCTGCAGATCTCCATC
AGCTCCTCGTCGCTCCGCGGCGCCTCCACGAAGCACGCGTCTGCTCCCGCCTACAATTTTTTTTACATATATTCATATTAGATATGATATGATGTTGCAT
AATAACTTAATTATATTTATGGTGATCTCTACTGGTATGAATATATCCTACTAGTAATAAGTAGGAAAAGAAATTATTCTATTATCCTTAGTTGAGGTAG
TAATATAATAGATATGATTTATTTGATTAGAAGAAAATGAACGGTTTATTAGATTGAATTCTACAACCGGTAAAGACCAATGTAAAAACACCAATGGGTT
AAATTCCATTATAAAGGAGAAAAAAATATACTATACGGATATTGTTTGTGGGCCTAGTAATAGAAGACAAATAAAGATGCAAACCATTTTCATTTCATTA
TGTAAAGAAAGTGTTTTCGCCTTACATATATCAGTTTTCAAAATGCAGCTTTGACCAATATCTAATGAAAAAACTAATTAATTTCAAAACATTGATTCTT
GACAGACTTGATGAACTTGCTTAAGATTTATAGTTTGGTGGTTAAGATCGATCGATCAAATTTAAACGAGAGTTTGACTCTGAAGAGATTCTCTAGAACA
TGATTTATCTCTCTCTAGAAAAAAGAAGTGGTCGATCAGCTTACATCTATGTAGAGATTGGCACGCCTAATGGCATCATCAAGACCAGTGACAGATCGAG
CGTCAGTCCGGGCCACGATAAAGAAGTCCCGATCACCAACGACCTCTCTCGCTGCAGCTATCTTCACAGCGTGCTCCTCTGCTGGTATCACCTAATTTAA
TTTTAACCAACACAAGGAGAGAGAGAGAGAGATCAAGGTAATTAATGCCGGCCACAATTTTGTAATCCTTTGATGATGGTGACAAGATGCAGAACATGGT
GCACTCGATCTTATTACCACTCTAGCTAAGCTAGAGAGAACATATAATGGCTGTGATAATATCATTAATTGATAAAAATGTTGGATCGATCGGATCTAGC
TAGAACTTGCCATTTAATACATCAGAGACATATTTATACATACAAAAGCAAAGTTGTAATGGGTCCTCCATATTTAACAGTGCATGCATGGTATAAAATG
TTGGGGCCTACGTGTCACTGAATTAATTCAGCAGAATCTTCATTTCCAATATCAATATGTTTAGTGAAAGTGAGACCATATATTCAAAGTAGATATAAAT
ATATATCAAATCTCCGCTGTGTGAAATAATAGAGGGTAAATATATATAGCTAGGGCGAATTTTCTGGTCATTTTGAACCATCCTAGCTAGCTATTTTTGC
ATTATAACTTGTGATAATTAAGTTGTGATTCATCACATTAGTCCTGTTATTATTTCGATGTCAGGGAACGACAGGATCGGTTACCAATTTATTTCCTCAT
TAGATTTTGGCAGGTGTGCATTAAGTGTACGTACTTAAGCTATAAATTGGCATGGATTTGCAATGGTGAACAGAGTGCTAAACAGAATTAGTATCACTAT
ACAGTAGTAGTACATGTTTGTCTAGAACATGAAGGGACAAAAACAGTGTCTTGTCAGTATTTA