Detailed information on CNT30117996


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002193, E-value = 5e-152

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521306Oryza nivaraSetaria italica24.7622.8383.7184forward
CNT30591347Oryza nivaraMusa acuminata22.8826.1982.35170forward

Expression of CNT30117996

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MCVGSVGNYLHAPDPAAIADVAEAGVAGAAGDGHAGGGLEPLEGCDGGGRRRHHGGGHLCSSPSSLLLCSSTS*

>peptide 2 (63 aa)
MHLILPPLLTLPKLELPERRATGMPAVDLSPWKGATVVADDAITEGAISAAHQALSFFARVLLE

>peptide 3 (54 aa)
LCINIYSRSFHRFHSHMPHPTTYSRSRYHSYIKSERDQVKQKQKQSTAGKIKRR*

>peptide 4 (37 aa)
MKLMSCTCLTLSKPMIRTNASGYSICFRRSSTVSGGR*

Sequence

>CNT30117996
CCCTTTGTATAAATATATATAGCCGGAGCTTTCATAGATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACATCAA
GTCAGAGAGAGATCAGGTGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGTGGGAGA
CATCATCGAATCAGAGATGAACAATTAAACGAGGCTATATATGACGATGACGGCTTAGTTGCCACCAGACTCCTCGCAGCCCGGGGGCTTGTAGGCGATG
AAGCTGATGAGCTGCACCTGCCTAACGTTGTCGAAGCCGATGATACGGACGAATGCATCAGGGTACTCGATCTGCTTCAGGAGGTCCTCCACGGTGAGCG
GTGGCAGGTAGGAGAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGAATGAATAAACGATAATTGAGTTGTTGGTTAATGTTGGTTAAGAA
GAAGAAGAAGAAGAAGAAGAATGTGTGTTGGATCAGTAGGTAATTACCTGCATGCACCTGATCCTGCCGCCATTGCTGACGTTGCCGAAGCTGGAGTTGC
CGGAGCGGCGGGCGACGGGCATGCCGGCGGTGGACTTGAGCCCCTGGAAGGGTGCGACGGTGGTGGCCGACGACGCCATCACGGAGGGGGCCATCTCTGC
AGCTCACCAAGCTCTCTCCTTCTTTGCTCGAGTACTTCTTGAG