Detailed information on CNT30117986


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002853, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697530Oryza nivaraOryza sativa41.6628.51100837forward
CNT30555565Oryza nivaraOryza glaberrima57.2454.6399.481150forward
CNT30371506Oryza nivaraOryza glumipatula57.2437.5799.041150forward
CNT30110392Oryza nivaraOryza longistaminata30.0648.0194.04604reverse complement
CNT30104613Oryza nivaraOryza rufipogon41.6630.5499.64837forward
CNT30578599Oryza nivaraOryza barthii57.2437.8499.221150forward

Expression of CNT30117986

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MQTQIHNLLISHAILQIKLLIIYDVFSIKSGLSFITFK*

>peptide 2 (36 aa)
MWFSSSFKNPSLLFYCCSSGSKGDFARTKLLHLELG*

>peptide 3 (31 aa)
MNADMNKPMNCITEIKITLISLVLIYAYMLN*

>peptide 4 (68 aa)
SSSRFPLSLSRSLLSLALWRTRAAPPIVGCVAAASAWLAGKVPPPPLLPPLPFLQSSLPLFPSLNLSI*

>peptide 5 (79 aa)
LFLPFSPFSFSLSSLPGAVAHKGCAPNCRVCRRRLCLAGRQGAAAAASSSSPLPSILSSPVSLSKSLYIAHLPFSPLLP*

Sequence

>CNT30117986
CTCTTCCTCCCGTTTTCCCCTTTCTCTTTCTCGCTCTCTTCTCTCCCTGGCGCTGTGGCGCACAAGGGCTGCGCCCCCAATTGTAGGGTGTGTCGCCGCC
GCCTCTGCCTGGCTGGCCGGCAAGGTGCCGCCGCCGCCGCTTCTTCCTCCTCTCCCCTTCCTTCAATCCTCTCTTCCCCTGTTTCCCTCTCTAAATCTCT
CTATATAGCTCATCTTCCCTTTTCTCCTCTACTGCCCTAGTTAGTATTATCCTCAATCTCTTCAACTTCTGCTCTATGCTAGTGTTTATCTCTCCTTGGT
GATGTCTGTGATAGCGGTGGACTAGTGATGCTGGTTGTATATAAATGATCCTAGTGGTCACTTGATTTTTTTTCTATACTCAGGGTTGTGCTTACTGATT
TCAGGGTTCTTACGTTTGACTTGGTTTGGTGAATAATGTCTATATGCTCATGATAAATGAATGCTGACATGAATAAACCTATGAATTGCATTACTGAAAT
TAAAATCACACTAATATCACTGGTCCTTATATATGCATACATGTTGAATTAACTGAATCTTCTAAAATTGGTGACATACAAGCAGGATCAGATCTTTGAC
TAAAGTCTTATTAATTTACATGGTTCTACACTTTGATAATCATGGCAATTTCTATCTATACATATTGAATTATTGGACTGAAGATCCCTAAAACTTGAAT
CTTGAAGTTAATAAATGATAATTTGTTTCTCTAAATAATTTACTACTAGTCTATATGTCCAGAATTTCATCTCTATATAATTTATTAGATTAGAGTTATT
GATAGATTATATTACTTACATTTGTTTTATTATGAGACTATGCTCTAAACATTTACTCTCCTGCACATAATAATCTGGTAAAGAAACTTGCATGTTCTGT
TAAGTCTTTACGATTTAGTACAACTATTATTACTTTAACACTATACATGCTTAAATGTACATCCAGATTCATCCTATGACGTCTTTTCTGAATTTTGTAG
TAAAGAACTAGATACATATGCAAACCCAGATTCATAACCTACTAATTTCACATGCTATCCTTCAAATCAAACTATTAATAATTTATGATGTTTTCTCTAT
TAAATCAGGGTTGAGCTTCATTACTTTTAAATGAAATCAGATTCATAGACACAGATCCTAACCCTTCCAGGAATATGCACATGTCAAGGTTATGCCCTGT
TTGCATGACTAGAATATGAAAACTTACAAATTCTCATGCATGATCAGTTTCTTCTATACATGCTCTATTCCTAAATAATTTATATCATGAACACTAGTTG
ATTTATACAAGAATTACAGCTACACATGCTTATTGATGCTATCAAGATTTCATATATTATAATTGATATACGTCTATATTAAGATTTAAAGACATACATT
TATCTTAAACTATAGCCTCCTAATTTTTGTCACTTATATTCATTTGGAATTTCTAAGGTTTTGGTCAGTATGGATGGTGCATATATCTGTATGAAACTCT
AGCTCTAACAAATGCTGTTACTATGAATGCAGGATCTACTCTCCTTCCCTATTTTAATTTTTGGTTACCTCTGATGATTCTACAGTGATTGAAAAATATG
TGGTTCAGCTCCTCCTTCAAAAATCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCTAAAGGTGATTTTGCTAGAACTAAGCTTCTCCACCTTGAGC
TTGGTTGATTGTTCCCCCTCTTGAACTGAACCCCCTGTTCTACTTGGAACTCAGGTGATTCTCCTCCTTGGCCCTTCCTCTACCGGTAATACTTGACTGC
TTCCTGACATCTTTCTTGATCTGCTACTGGTGATTCTCTTCCTCCTCTTGAGACTGATCCTCTTGCTTGATTATTGCTGCTCTATCTTGCTTCCTAACCT
TGGTAACATCTTCTCCAAGAGCTGAAACCCCTGTTCATCCAAGAACAGAACACCCTGCTTCTCCTTTTACTCCTCTGACCTCCCTCTCTCTCTCTTCCTG
ATTGTTTTT