Detailed information on CNT30117985


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004001, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695692Oryza nivaraOryza sativa23.0676.9597.17424forward
CNT30552136Oryza nivaraOryza glaberrima100.3378.3192.791845forward
CNT30596399Oryza nivaraOryza meridionalis100.1679.4789.851842forward
CNT30370734Oryza nivaraOryza glumipatula94.7393.3590.991742forward
CNT30110043Oryza nivaraOryza longistaminata95.4993.797.151756forward
CNT30100733Oryza nivaraOryza rufipogon94.6287.2291.841740forward
CNT30575011Oryza nivaraOryza barthii100.2760.8292.791844forward

Expression of CNT30117985

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MKMKTSTRPPRSISRSKPSMKTSRCFVPSPKPRLWNKIDA*

>peptide 2 (35 aa)
FRARVRGSSGRRFRRRRPQPCARQAPLITLSLYFQ*

>peptide 3 (37 aa)
MLFAKMHCLVHTINMFRPRIVYTTDGPTQLSSCTYIT*

>peptide 4 (43 aa)
MMMRSHAFVVWLRIIVKDRFLWEIHPNTLQCDHTGIYGMPLAK*

>peptide 5 (89 aa)
MPLWFGYVLSLRTDSFGKSIQTRYSATTRVFMGCLWLSKLLSHGSWCANGCGMPRMRRRSVTHFCPSWVSFCLYCGVVPVGVGGILGIS*

>peptide 6 (42 aa)
MCCREKKLIEEQINCCSLILTSCCKATCGMGRGVSLLPTIKT*

Sequence

>CNT30117985
GTTTAGAGCCCGAGTTCGAGGAAGCTCCGGACGCCGCTTTCGAAGGAGAAGACCCCAACCCTGTGCAAGGCAAGCCCCTTTGATCACATTGTCCCTATAT
TTTCAATAATATGTTGTTTGCGAAGATGCATTGTTTAGTTCACACGATTAACATGTTTAGGCCTCGGATTGTTTATACAACCGACGGACCAACTCAACTC
AGTAGTTGCACTTATATTACATAGGTTGATGTTTCCATACCATTGATAGCTCCACAAATATTTGCGCCGGTATCGTTATACGATTACCGAGGTAGTTTAG
CTTAGCCATGCTTACGTTGTTGCCGTGTGGGAAACTTGGGTTATTCCAAATACATGTTTAAAATTCCGGTACATTGTACCGAGGAGTTGTGAAATAAAAT
GTGTTGTGAAAGCAATGATGATGCGGAGTCATGCCTTTGTGGTTTGGCTACGTATTATCGTTAAGGACCGATTCCTTTGGGAAATCCATCCAAACACGTT
ACAGTGCGACCACACGGGTATTTATGGGATGCCTCTGGCTAAGTAAATTGTTATCACATGGGAGTTGGTGTGCCAATGGTTGTGGAATGCCGAGGATGAG
GAGACGAAGTGTTACACATTTTTGCCCATCATGGGTGTCTTTTTGCCTCTATTGTGGCGTGGTACCGGTAGGAGTAGGAGGCATCCTCGGTATTTCCTGA
GTGGATGACGGCTGTCATTGCCTGATACTTGGCTATGGATCTTAGCCCAACTAGGTGGCATGCAGTTTTCATGGGTTAGCTTTGGAAAGGCCTTATCACG
AACTTTCGTTGCCGACGGGTAAACGATGTCAGTTTCGTGTCGTGTGGGTAAAGCGTGCACCCTCTGCAGAGATTAATGAACTGTTCGAACAGTCGTGCCC
ACAGTCAAGGGCGAGTGTAAGGTGTTTCTCATAGCGTAGATTTGTTTGACAAATGTTTGTGAAGAAGTGGTTACTGGGAAGGGTAACGTTACCAGAGTCC
GCCTGTGTGGCAGACGGCTAACCTGGGTGGTTAGGAACGGGTCTGTGTGACCTGGGGTGTCGTCCGACACCGAGGTGTTGTTAGGGCCATGATGATGGCG
TTGTTGTGCTGAGATAACTTGTGTGGACTATGTGTTGTCGTGAGAAGAAACTAATAGAGGAACAAATTAATTGTTGTTCGTTAATCTTGACAAGTTGTTG
CAAAGCAACTTGTGGAATGGGTCGAGGCGTGAGCCTCCTCCCGACAATTAAAACTTGACTCACTCACTAGGAGTTTTGTGAAATAAATCACTTTGCTAAA
AAGGCAGCTTTCGCAAATAAAACCTTAGCCTTCTTGTTTAAACCAAACATGTCATTCTTTCCCCTGGCTTGCTGAGTACGTTAAGTACTCACCCTTGCCC
CTTATAATATTATATAGAGTATGAAGATGAAGACATCGACCCGACCGCCGAGGAGTATCTCCAGGAGCAAGCCGAGTATGAAGACTTCTAGATGTTTCGT
GCCTAGCCCCAAGCCTCGCCTGTGGAATAAGATAGATGCCTAGGTTCTTCGCCTAGTGCATAGTTGCTTAGTCGCTTAGTGCTCCGCGCTGTTCGCTTCT
GCGCCGTCGCTTTTATGGTTTTCTGTAATGTTGTGTTGCTCATCTATGGGCCTGTCCATGATAGTAACTTATGTAAGGACTACTACCCAGTGATGTAATA
AAGCAGTTTACTTTGATTCCACATTTATTCTGTGTGTACCAGCTAGTGTATCCTGGGACTGATACTATATCACAGGTAATGCATAACACCCCGGTGTGAC
TTAGCTGTGTTAATGGCTAATGAATGTCGGGGCGTTACA