Detailed information on CNT30117984


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002495, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555739Oryza nivaraOryza glaberrima33.7720.1898.22337forward
CNT30104696Oryza nivaraOryza rufipogon50.620.1699.8505forward

Expression of CNT30117984

Peptides detected in this lncRNA

>peptide 1 (39 aa)
ALSLSLSSLYHDRPPPLPPADLLFHSPTSQNLAPLARPR*

>peptide 2 (34 aa)
LSLSLCLLSTMTGHHHCHRPISSSTALHPKTLRH*

>peptide 3 (59 aa)
MNCTACEVKKKGVQVEFYAWLGLIVTNDCILSVYCIESKCHSIFRALQSPLLTPSTRSM*

>peptide 4 (92 aa)
MSAGGKHLPPPFRPLPSLPLPDECLLGCASLGNMFPRQRRRSPPTRAPAPLLSLFSVFGWKKKQKERGYGRKKKRKRKEKNLPDSYKPTTNN*

Sequence

>CNT30117984
AGCTCTCTCTCTCTCTCTGTCTTCTCTCTACCATGACCGGCCACCACCATTGCCACCGGCCGATCTCCTCTTCCACAGCCCTACATCCCAAAACCTTGCG
CCATTAGCTCGGCCTCGATGAGGTGAATCCATTTTGCCCCTTTCCCCCTTCTCTCCCCCTTTGAATCAAGCCATCACCACCACCATCCATGTCGGCCGGA
GGTAAGCACTTGCCGCCGCCGTTCCGGCCTCTTCCCTCACTCCCTTTGCCAGACGAATGCCTCCTTGGGTGCGCGTCGCTCGGGAACATGTTTCCCCGTC
AACGTCGCCGTTCCCCGCCAACTAGAGCACCGGCGCCCCTCCTCTCCCTCTTCTCTGTGTTCGGCTGGAAGAAGAAGCAGAAGGAGAGAGGATACGGGAG
GAAGAAGAAGAGAAAAAGAAAAGAAAAGAATCTCCCTGACAGCTACAAGCCTACAACAAACAACTAAGCCCATGGTAGATGAACTGTACAGCATGTGAGG
TGAAAAAAAAGGGTGTACAAGTTGAATTCTACGCATGGCTTGGGCTAATAGTAACAAATGACTGTATCCTAAGTGTATATTGTATTGAATCAAAATGTCA
CAGCATCTTCAGGGCATTGCAGAGCCCTCTTCTGACGCCAAGCACACGCAGCATGTGATGTAACTTTCCCAGCTACTTTAGAACATGCCTTGTTCATTAT
CTGCAAGATGAGATAGTGGTGTTTTCTGTAAGTTTCACTTCTATGTAACAGAAGCTCTATCCAACAATTGAACTATTGAAGTGCCATCTTAGATGATTGT
CATATGGTACATTTCTTTGTGCAATGAGCGAATGGCGATGTAACGTTTGATATTTGTAATTTCAATATTCAAGATCATATGGTAAATTGGGAAAAAGAAG
TGGCACAAAGTTCTTGCCACGTCCAGTATGGAAGTCAAATACTCTGAACTCTAGTATCTTTCTTAACAAGGTGATGGCATGAATGGTGTTTTTTTTTT